› 7ya3

X-ray diffraction
3Å resolution

Formate dehydrogenase from Novosphingobium sp. AP12 with NADP and Azide

Released:
DOI: 10.2210/pdb7ya3/pdb
Model geometry
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PDB entry 7ya3 coloured by chain, front view.
PDB entry 7ya3 coloured by chain, side view.
PDB entry 7ya3 coloured by chain, top view.
Source organism: Novosphingobium sp. AP12
Entry authors: Kim S, Kim K-J

Function and Biology Details

Reaction catalysed: 
Formate + NAD(+) = CO(2) + NADH
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-221135 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Formate dehydrogenase Chains: A, B
Molecule details ›
Chains: A, B
Length: 392 amino acids
Theoretical weight: 43.52 KDa
Source organism: Novosphingobium sp. AP12
Expression system: Escherichia coli K-12
UniProt:
  • Canonical: J2HCX1 (Residues: 1-384; Coverage: 100%)
Gene name: PMI02_01157
Sequence domains:

Ligands and Environments

2 bound ligands:
Ligand NAP 2 x NAP
Ligand AZI 2 x AZI
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: PAL/PLS BEAMLINE 7A (6B, 6C1)
Spacegroup: P43
Unit cell:
a: 64.343Å b: 64.343Å c: 180.621Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.172 0.167 0.253
Expression system: Escherichia coli K-12

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