› 7ylo

X-ray diffraction
1.83Å resolution

Conversion of indole-3-acetic acid into indole-3-aldehyde in bacteria Metabolic network of tryptophan around the indole-3-aldehyde formation

Released:
DOI: 10.2210/pdb7ylo/pdb
PDB entry 7ylo coloured by chain, front view.
PDB entry 7ylo coloured by chain, side view.
PDB entry 7ylo coloured by chain, top view.
Source organism: Limosilactobacillus fermentum
Entry authors: Cheng J, Luo Y, Zhu J, Tan R, Wang N, Lebedev AA

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-220195 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Dyp-type peroxidase Chains: A, B
Molecule details ›
Chains: A, B
Length: 313 amino acids
Theoretical weight: 36.3 KDa
Source organism: Limosilactobacillus fermentum
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A0G9GI91 (Residues: 1-313; Coverage: 100%)
Gene names: BUW47_03110, C1Y38_03730, GC247_08580, HCY95_00451, LACFE_CDS1279, yfeX
Sequence domains:

Ligands and Environments

1 bound ligand:
Ligand HEM 2 x HEM
1 modified residue:
Ligand MSE 14 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL02U1
Spacegroup: P321
Unit cell:
a: 135.179Å b: 135.179Å c: 83.979Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.204 0.202 0.238
Expression system: Escherichia coli

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