› 7ylt

X-ray diffraction
2.3Å resolution

Structure of a bacteria protein

Released:
DOI: 10.2210/pdb7ylt/pdb
PDB entry 7ylt coloured by chain, front view.
PDB entry 7ylt coloured by chain, side view.
PDB entry 7ylt coloured by chain, top view.
Source organism: Variovorax paradoxus
Entry authors: Zhang H, Ma YJ, Yu GM, Li XZ

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-218339 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Leucine-binding protein domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 361 amino acids
Theoretical weight: 38.38 KDa
Source organism: Variovorax paradoxus
Expression system: Escherichia coli
UniProt:
  • Canonical: T1X8R6 (Residues: 28-387; Coverage: 100%)
Gene name: VAPA_1c15920
Sequence domains: Periplasmic binding protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: P1
Unit cell:
a: 36.775Å b: 75.745Å c: 119.706Å
α: 85.6° β: 89.16° γ: 89.37°
R-values:
R R work R free
0.188 0.186 0.228
Expression system: Escherichia coli

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