7yqx

Electron Microscopy
3.72Å resolution

SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state1)

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero heptamer (preferred)
PDBe Complex ID:
PDB-CPX-225413 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (5 distinct):
Spike glycoprotein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 1270 amino acids
Theoretical weight: 141.13 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 1-1273; Coverage: 100%)
Gene names: 2, S
Sequence domains:
S309 heavy chain Chains: H, I
Molecule details ›
Chains: H, I
Length: 126 amino acids
Theoretical weight: 13.92 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
S309 light chain Chains: F, G
Molecule details ›
Chains: F, G
Length: 214 amino acids
Theoretical weight: 23.2 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA, FUC
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.72Å
Relevant EMDB volumes: EMD-34038
Expression system: Homo sapiens