› 7z7m

X-ray diffraction
2.6Å resolution

REP-related Chom18 variant with double CC mismatch

Released:
DOI: 10.2210/pdb7z7m/pdb
PDB entry 7z7m coloured by chain, front view.
PDB entry 7z7m coloured by chain, side view.
PDB entry 7z7m coloured by chain, top view.
Source organism: Cardiobacterium hominis
Primary publication:
Conformation-based refinement of 18-mer DNA structures.
Svoboda J, Berdár D, Kolenko P, Černý J, Nováková Z, Pavlíček J, Schneider B
OpenAccess logo Acta Crystallogr D Struct Biol 79 655-665 (2023)
PMID: 37338420

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-122393 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
Chom18-CC DNA Chain: A
Molecule details ›
Chain: A
Length: 18 nucleotides
Theoretical weight: 5.48 KDa
Source organism: Cardiobacterium hominis
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand SR 1 x SR
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BRUKER METALJET
Spacegroup: P43212
Unit cell:
a: 38.09Å b: 38.09Å c: 87.42Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.238 0.233 0.292
Expression system: Not provided

Quick links

Citations

1 mention without citation

Conformation-based refinement of 18-mer DNA structures.
Svoboda et al. (2023)