8gtp

Electron Microscopy
3.1Å resolution

cryo-EM structure of Omicron BA.5 S protein in complex with XGv289

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
hetero nonamer (preferred)
PDBe Complex ID:
PDB-CPX-225438 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (4 distinct):
Spike glycoprotein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 1271 amino acids
Theoretical weight: 141.33 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 1-1273; Coverage: 100%)
Gene names: 2, S
Sequence domains:
heavy chain of XGv289 Chains: H, I, J
Molecule details ›
Chains: H, I, J
Length: 120 amino acids
Theoretical weight: 13.1 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
light chain of XGv289 Chains: L, M, N
Molecule details ›
Chains: L, M, N
Length: 111 amino acids
Theoretical weight: 11.59 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.1Å
Relevant EMDB volumes: EMD-34261
Expression system: Homo sapiens