› 8aty

X-ray diffraction
1.9Å resolution

Crystal structure of PPAR gamma (PPARG) in complex with JP85 (compound 1).

Released:
DOI: 10.2210/pdb8aty/pdb
PDB entry 8aty coloured by chain, front view.
PDB entry 8aty coloured by chain, side view.
PDB entry 8aty coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Targeting the Alternative Vitamin E Metabolite Binding Site Enables Noncanonical PPARγ Modulation.
Arifi S, Marschner JA, Pollinger J, Isigkeit L, Heitel P, Kaiser A, Obeser L, Höfner G, Proschak E, Knapp S, Chaikuad A, Heering J, Merk D
OpenAccess logo J Am Chem Soc (2023)
PMID: 37385602

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-153368 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peroxisome proliferator-activated receptor gamma Chain: A
Molecule details ›
Chain: A
Length: 277 amino acids
Theoretical weight: 31.67 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P37231 (Residues: 231-505; Coverage: 55%)
Gene names: NR1C3, PPARG
Sequence domains: Ligand-binding domain of nuclear hormone receptor

Ligands and Environments

2 bound ligands:
Ligand O7O 2 x O7O
Ligand GOL 5 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: P43212
Unit cell:
a: 65.331Å b: 65.331Å c: 156.041Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.177 0.176 0.201
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

1 mention without citation

Targeting the Alternative Vitamin E Metabolite Binding Site Enables Noncanonical PPARγ Modulation.
Arifi et al. (2023)