8ay4

Electron Microscopy
4.7Å resolution

Human rhinovirus 2 virion in situ

Released:
Source organism: rhinovirus A2
Entry authors: Ishemgulova A, Mukhamedova L, Trebichalska Z, Payne P, Smerdova L, Moravcova J, Hrebik D, Buchta D, Skubnik K, Fuzik T, Novacek J, Plevka P
Related structures: EMD-15710

Function and Biology Details

Reactions catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
Selective cleavage of Tyr-|-Gly bond in picornavirus polyprotein.
NTP + H(2)O = NDP + phosphate
Biochemical function:
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
hetero 240-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-138284 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (4 distinct):
Capsid protein VP1 Chain: A
Molecule details ›
Chain: A
Length: 269 amino acids
Theoretical weight: 30.65 KDa
Source organism: rhinovirus A2
UniProt:
  • Canonical: P04936 (Residues: 582-850; Coverage: 13%)
Sequence domains: picornavirus capsid protein
Capsid protein VP2 Chain: B
Molecule details ›
Chain: B
Length: 250 amino acids
Theoretical weight: 27.9 KDa
Source organism: rhinovirus A2
UniProt:
  • Canonical: P04936 (Residues: 81-330; Coverage: 12%)
Sequence domains: picornavirus capsid protein
Capsid protein VP3 Chain: C
Molecule details ›
Chain: C
Length: 237 amino acids
Theoretical weight: 26.11 KDa
Source organism: rhinovirus A2
UniProt:
  • Canonical: P04936 (Residues: 331-567; Coverage: 11%)
Sequence domains: picornavirus capsid protein
Capsid protein VP4 Chain: D
Molecule details ›
Chain: D
Length: 25 amino acids
Theoretical weight: 2.81 KDa
Source organism: rhinovirus A2
UniProt:
  • Canonical: P04936 (Residues: 23-44; Coverage: 1%)
Sequence domains: Picornavirus coat protein (VP4)

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.7Å
Relevant EMDB volumes: EMD-15710