Function and Biology

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Source organism: Escherichia coli K-12
Biochemical function: structural constituent of ribosome
Biological process: translation
Cellular component: ribonucleoprotein complex

GO terms

Sequence families

Pfam Protein families (Pfam)
PF00347
Domain description: Ribosomal protein L6
Occurring in:
  1. Large ribosomal subunit protein uL6

PF01165
Domain description: Ribosomal protein S21
Occurring in:
  1. Small ribosomal subunit protein bS21

PF01649
Domain description: Ribosomal protein S20
Occurring in:
  1. Small ribosomal subunit protein bS20

PF00203
Domain description: Ribosomal protein S19
Occurring in:
  1. Small ribosomal subunit protein uS19

PF01084
Domain description: Ribosomal protein S18
Occurring in:
  1. Small ribosomal subunit protein bS18

PF00366
Domain description: Ribosomal protein S17
Occurring in:
  1. Small ribosomal subunit protein uS17

PF00886
Domain description: Ribosomal protein S16
Occurring in:
  1. Small ribosomal subunit protein bS16

PF00312
Domain description: Ribosomal protein S15
Occurring in:
  1. Small ribosomal subunit protein uS15

PF00253
Domain description: Ribosomal protein S14p/S29e
Occurring in:
  1. Small ribosomal subunit protein uS14

PF00416
Domain description: Ribosomal protein S13/S18
Occurring in:
  1. Small ribosomal subunit protein uS13

PF00164
Domain description: Ribosomal protein S12/S23
Occurring in:
  1. Small ribosomal subunit protein uS12

PF00411
Domain description: Ribosomal protein S11
Occurring in:
  1. Small ribosomal subunit protein uS11

PF00338
Domain description: Ribosomal protein S10p/S20e
Occurring in:
  1. Small ribosomal subunit protein uS10

PF00380
Domain description: Ribosomal protein S9/S16
Occurring in:
  1. Small ribosomal subunit protein uS9

PF00410
Domain description: Ribosomal protein S8
Occurring in:
  1. Small ribosomal subunit protein uS8

PF00177
Domain description: Ribosomal protein S7p/S5e
Occurring in:
  1. Small ribosomal subunit protein uS7

PF01250
Domain description: Ribosomal protein S6
Occurring in:
  1. Small ribosomal subunit protein bS6

PF03719
Domain description: Ribosomal protein S5, C-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS5

PF00333
Domain description: Ribosomal protein S5, N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS5

PF01479
Domain description: S4 domain
Occurring in:
  1. Small ribosomal subunit protein uS4

PF00163
Domain description: Ribosomal protein S4/S9 N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS4

PF00189
Domain description: Ribosomal protein S3, C-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS3

PF07650
Domain description: KH domain
Occurring in:
  1. Small ribosomal subunit protein uS3

PF00318
Domain description: Ribosomal protein S2
Occurring in:
  1. Small ribosomal subunit protein uS2

PF00444
Domain description: Ribosomal protein L36
Occurring in:
  1. Large ribosomal subunit protein bL36A

PF01632
Domain description: Ribosomal protein L35
Occurring in:
  1. Large ribosomal subunit protein bL35

PF00468
Domain description: Ribosomal protein L34
Occurring in:
  1. Large ribosomal subunit protein bL34

PF00471
Domain description: Ribosomal protein L33
Occurring in:
  1. Large ribosomal subunit protein bL33

PF01783
Domain description: Ribosomal L32p protein family
Occurring in:
  1. Large ribosomal subunit protein bL32

PF00327
Domain description: Ribosomal protein L30p/L7e
Occurring in:
  1. Large ribosomal subunit protein uL30

PF00831
Domain description: Ribosomal L29 protein
Occurring in:
  1. Large ribosomal subunit protein uL29

PF00830
Domain description: Ribosomal L28 family
Occurring in:
  1. Large ribosomal subunit protein bL28

PF01016
Domain description: Ribosomal L27 protein
Occurring in:
  1. Large ribosomal subunit protein bL27

PF01386
Domain description: Ribosomal L25p family
Occurring in:
  1. Large ribosomal subunit protein bL25

PF17136
Domain description: Ribosomal proteins 50S L24/mitochondrial 39S L24
Occurring in:
  1. Large ribosomal subunit protein uL24

PF00467
Domain description: KOW motif
Occurring in:
  1. Large ribosomal subunit protein uL24

PF00276
Domain description: Ribosomal protein L23
Occurring in:
  1. Large ribosomal subunit protein uL23

PF00237
Domain description: Ribosomal protein L22p/L17e
Occurring in:
  1. Large ribosomal subunit protein uL22

PF00829
Domain description: Ribosomal prokaryotic L21 protein
Occurring in:
  1. Large ribosomal subunit protein bL21

PF00453
Domain description: Ribosomal protein L20
Occurring in:
  1. Large ribosomal subunit protein bL20

PF01245
Domain description: Ribosomal protein L19
Occurring in:
  1. Large ribosomal subunit protein bL19

PF00861
Domain description: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Occurring in:
  1. Large ribosomal subunit protein uL18

PF01196
Domain description: Ribosomal protein L17
Occurring in:
  1. Large ribosomal subunit protein bL17

PF00252
Domain description: Ribosomal protein L16p/L10e
Occurring in:
  1. Large ribosomal subunit protein uL16

PF00828
Domain description: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Occurring in:
  1. Large ribosomal subunit protein uL15

PF00238
Domain description: Ribosomal protein L14p/L23e
Occurring in:
  1. Large ribosomal subunit protein uL14

PF00572
Domain description: Ribosomal protein L13
Occurring in:
  1. Large ribosomal subunit protein uL13

PF03948
Domain description: Ribosomal protein L9, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein bL9

PF01281
Domain description: Ribosomal protein L9, N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein bL9

PF00673
Domain description: ribosomal L5P family C-terminus
Occurring in:
  1. Large ribosomal subunit protein uL5

PF00281
Domain description: Ribosomal protein L5
Occurring in:
  1. Large ribosomal subunit protein uL5

PF00573
Domain description: Ribosomal protein L4/L1 family
Occurring in:
  1. Large ribosomal subunit protein uL4

PF00297
Domain description: Ribosomal protein L3
Occurring in:
  1. Large ribosomal subunit protein uL3

PF03947
Domain description: Ribosomal Proteins L2, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL2

PF00181
Domain description: Ribosomal Proteins L2, RNA binding domain
Occurring in:
  1. Large ribosomal subunit protein uL2

Rfam RNA families (Rfam)
RF02541
Domain description: Bacterial large subunit ribosomal RNA
Occurring in:
  1. 23S rRNA RRLG-RRNA
The deposited structure of PDB entry 8bh4 contains 1 copy of Rfam domain RF02541 (Bacterial large subunit ribosomal RNA) in 23S rRNA RRLG-RRNA. Showing 1 copy in chain WA [auth 0].

RF00001
Domain description: 5S ribosomal RNA
Occurring in:
  1. 5S ribosomal RNA
The deposited structure of PDB entry 8bh4 contains 1 copy of Rfam domain RF00001 (5S ribosomal RNA) in 5S ribosomal RNA. Showing 1 copy in chain XA [auth 1].

RF00177
Domain description: Bacterial small subunit ribosomal RNA
Occurring in:
  1. 16S rRNA RRSB-RRNA
The deposited structure of PDB entry 8bh4 contains 1 copy of Rfam domain RF00177 (Bacterial small subunit ribosomal RNA) in 16S rRNA RRSB-RRNA. Showing 1 copy in chain YA [auth 2].

RF00005
Domain description: tRNA
Occurring in:
  1. Deacylated P-site tRNA(fMet)
  2. Dipeptidyl A-site tRNA(Lys)
The deposited structure of PDB entry 8bh4 contains 1 copy of Rfam domain RF00005 (tRNA) in Deacylated P-site tRNA(fMet). Showing 1 copy in chain AB [auth 4].
The deposited structure of PDB entry 8bh4 contains 1 copy of Rfam domain RF00005 (tRNA) in Dipeptidyl A-site tRNA(Lys). Showing 1 copy in chain BB [auth 5].