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RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W)

Source organisms:
Biochemical function: DNA binding
Biological process: transcription by RNA polymerase II
Cellular component: nucleus

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EC 2.7.7.6: DNA-directed RNA polymerase

Reaction catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Systematic name:
Nucleoside-triphosphate:RNA nucleotidyltransferase (DNA-directed)
Alternative Name(s):
  • C RNA formation factors
  • C ribonucleic acid formation factors
  • DNA-dependent RNA nucleotidyltransferase
  • DNA-dependent RNA polymerase
  • DNA-dependent ribonucleate nucleotidyltransferase
  • Deoxyribonucleic acid-dependent ribonucleic acid polymerase
  • RNA nucleotidyltransferase
  • RNA nucleotidyltransferase (DNA-directed)
  • RNA polymerase
  • RNA polymerase I
  • RNA polymerase II
  • RNA polymerase III
  • RNA transcriptase
  • Ribonucleate nucleotidyltransferase
  • Ribonucleate polymerase
  • Ribonucleic acid nucleotidyltransferase
  • Ribonucleic acid polymerase
  • Ribonucleic acid transcriptase
  • Ribonucleic polymerase
  • Ribonucleic transcriptase
  • Transcriptase

EC 3.6.4.12: DNA helicase

Reaction catalysed:
ATP + H(2)O = ADP + phosphate
Systematic name:
ATP phosphohydrolase (DNA helix unwinding)
Alternative Name(s):
  • 3' to 5' DNA helicase
  • 3'-5' DNA helicase
  • 3'-5' PfDH
  • 5' to 3' DNA helicase
  • AvDH1
  • BACH1 helicase
  • BLM protein
  • BRCA1-associated C-terminal helicase
  • BcMCM
  • CeWRN-1
  • DNA helicase 120
  • DNA helicase A
  • DNA helicase E
  • DNA helicase II
  • DNA helicase III
  • DNA helicase RECQL5'
  • DNA helicase VI
  • Dbp9p
  • DmRECQ5
  • DnaB
  • DnaB helicase E1
  • HHcsA
  • HPif1
  • Hel E
  • Helicase DnaB
  • Helicase HDH IV
  • Helicase domain of bacteriophage T7 gene 4 protein helicase
  • Hmi1p
  • MCM helicase
  • MCM protein
  • MER3 helicase
  • MER3 protein
  • MPH1
  • PDH120
  • PIF1
  • PcrA
  • PcrA helicase
  • PfDH A
  • Pfh1p
  • UvrD

EC 2.3.1.48: Histone acetyltransferase

Reaction catalysed:
Acetyl-CoA + [protein]-L-lysine = CoA + [protein]-N(6)-acetyl-L-lysine
Systematic name:
Acetyl-CoA:[protein]-L-lysine acetyltransferase
Alternative Name(s):
  • Acetyl-CoA:histone acetyltransferase
  • Histone acetokinase
  • Histone acetylase
  • Histone transacetylase
  • Lysine acetyltransferase
  • Nucleosome-histone acetyltransferase
  • Protein lysine acetyltransferase

EC 2.7.11.23: [RNA-polymerase]-subunit kinase

Reaction catalysed:
ATP + [DNA-directed RNA polymerase] = ADP + [DNA-directed RNA polymerase] phosphate
Systematic name:
ATP:[DNA-directed RNA polymerase] phosphotransferase
Alternative Name(s):
  • CTD kinase
  • STK9

EC 2.7.11.22: Cyclin-dependent kinase

Reaction catalysed:
ATP + a protein = ADP + a phosphoprotein
Systematic name:
ATP:cyclin phosphotransferase
Alternative Name(s):
  • Bur1
  • Bur1 Cdk
  • CDK
  • Cak1
  • Cak1p
  • Cdc2
  • Cdc2 kinase
  • Cdc28p
  • Cdk-activating kinase
  • Cdk-activating protein kinase
  • Cdk1
  • Cdk2
  • Cdk2
  • Cdk3
  • Cdk4
  • Cdk5
  • Cdk6
  • Cdk7
  • Cdk8
  • Cdk9
  • Cyclin A-activated cdc2
  • Cyclin A-activated cdk2
  • Cyclin D-cdk6 kinase
  • Cyclin D-dependent kinase
  • Cyclin E kinase
  • Cyclin-A associated kinase
  • Cyclin-dependent kinase 6
  • Cyclin-dependent kinase-2
  • Cyclin-dependent kinase-4
  • Cyclin-dependent protein kinase activating kinase
  • Cyk
  • D-type cyclin kinase
  • Nclk
  • Neuronal cdc2-like kinase
  • PCTAIRE-1
  • STK25

GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF05001
Domain description: RNA polymerase Rpb1 C-terminal repeat
Occurring in:
  1. DNA-directed RNA polymerase subunit
The deposited structure of PDB entry 8byq contains 32 copies of Pfam domain PF05001 (RNA polymerase Rpb1 C-terminal repeat ) in DNA-directed RNA polymerase subunit. Showing 32 copies in chain K [auth A] (this domain is out of the observed residue ranges!).

PF00125
Domain description: Core histone H2A/H2B/H3/H4
Occurring in:
  1. Histone H3.2
  2. Histone H2A type 1
  3. Histone H2B 1.1
The deposited structure of PDB entry 8byq contains 2 copies of Pfam domain PF00125 (Core histone H2A/H2B/H3/H4) in Histone H3.2. Showing 1 copy in chain KA [auth e].
The deposited structure of PDB entry 8byq contains 2 copies of Pfam domain PF00125 (Core histone H2A/H2B/H3/H4) in Histone H2A type 1. Showing 1 copy in chain IA [auth c].
The deposited structure of PDB entry 8byq contains 2 copies of Pfam domain PF00125 (Core histone H2A/H2B/H3/H4) in Histone H2B 1.1. Showing 1 copy in chain JA [auth d].

PF16211
Domain description: C-terminus of histone H2A
Occurring in:
  1. Histone H2A type 1
The deposited structure of PDB entry 8byq contains 2 copies of Pfam domain PF16211 (C-terminus of histone H2A) in Histone H2A type 1. Showing 1 copy in chain IA [auth c].

PF15511
Domain description: Centromere kinetochore component CENP-T histone fold
Occurring in:
  1. Histone H4
The deposited structure of PDB entry 8byq contains 2 copies of Pfam domain PF15511 (Centromere kinetochore component CENP-T histone fold) in Histone H4. Showing 1 copy in chain HA [auth b].

PF03153
Domain description: Transcription factor IIA, alpha/beta subunit
Occurring in:
  1. Transcription initiation factor IIA subunit 1
The deposited structure of PDB entry 8byq contains 2 copies of Pfam domain PF03153 (Transcription factor IIA, alpha/beta subunit) in Transcription initiation factor IIA subunit 1. Showing 2 copies in chain CA [auth U].

PF00352
Domain description: Transcription factor TFIID (or TATA-binding protein, TBP)
Occurring in:
  1. TATA-box-binding protein
The deposited structure of PDB entry 8byq contains 2 copies of Pfam domain PF00352 (Transcription factor TFIID (or TATA-binding protein, TBP)) in TATA-box-binding protein. Showing 2 copies in chain Y [auth O].

PF00382
Domain description: Transcription factor TFIIB repeat
Occurring in:
  1. Transcription initiation factor IIB
The deposited structure of PDB entry 8byq contains 2 copies of Pfam domain PF00382 (Transcription factor TFIIB repeat) in Transcription initiation factor IIB. Showing 2 copies in chain W [auth M].

PF08271
Domain description: TFIIB zinc-binding
Occurring in:
  1. Transcription initiation factor IIB
  2. General transcription factor IIE subunit 1
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF08271 (TFIIB zinc-binding) in Transcription initiation factor IIB. Showing 1 copy in chain W [auth M].
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF08271 (TFIIB zinc-binding) in General transcription factor IIE subunit 1. Showing 1 copy in chain EA [auth W].

PF18121
Domain description: TFA2 Winged helix domain 2
Occurring in:
  1. Transcription initiation factor IIE subunit beta
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF18121 (TFA2 Winged helix domain 2) in Transcription initiation factor IIE subunit beta. Showing 1 copy in chain FA [auth X].

PF02186
Domain description: TFIIE beta subunit core domain
Occurring in:
  1. Transcription initiation factor IIE subunit beta
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF02186 (TFIIE beta subunit core domain) in Transcription initiation factor IIE subunit beta. Showing 1 copy in chain FA [auth X].

PF02002
Domain description: TFIIE alpha subunit
Occurring in:
  1. General transcription factor IIE subunit 1
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF02002 (TFIIE alpha subunit) in General transcription factor IIE subunit 1. Showing 1 copy in chain EA [auth W].

PF02751
Domain description: Transcription initiation factor IIA, gamma subunit
Occurring in:
  1. Transcription initiation factor IIA subunit 2
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF02751 (Transcription initiation factor IIA, gamma subunit) in Transcription initiation factor IIA subunit 2. Showing 1 copy in chain DA [auth V].

PF02268
Domain description: Transcription initiation factor IIA, gamma subunit, helical domain
Occurring in:
  1. Transcription initiation factor IIA subunit 2
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF02268 (Transcription initiation factor IIA, gamma subunit, helical domain) in Transcription initiation factor IIA subunit 2. Showing 1 copy in chain DA [auth V].

PF02270
Domain description: TFIIF, beta subunit HTH domain
Occurring in:
  1. General transcription factor IIF subunit 2
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF02270 (TFIIF, beta subunit HTH domain) in General transcription factor IIF subunit 2. Showing 1 copy in chain AA [auth R].

PF17683
Domain description: TFIIF, beta subunit N-terminus
Occurring in:
  1. General transcription factor IIF subunit 2
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF17683 (TFIIF, beta subunit N-terminus) in General transcription factor IIF subunit 2. Showing 1 copy in chain AA [auth R].

PF05793
Domain description: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
Occurring in:
  1. General transcription factor IIF subunit 1
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF05793 (Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)) in General transcription factor IIF subunit 1. Showing 1 copy in chain Z [auth Q].

PF03604
Domain description: DNA directed RNA polymerase, 7 kDa subunit
Occurring in:
  1. DNA-directed RNA polymerases I, II, and III subunit RPABC4
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF03604 (DNA directed RNA polymerase, 7 kDa subunit) in DNA-directed RNA polymerases I, II, and III subunit RPABC4. Showing 1 copy in chain V [auth L].

PF13656
Domain description: RNA polymerase Rpb3/Rpb11 dimerisation domain
Occurring in:
  1. DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF13656 (RNA polymerase Rpb3/Rpb11 dimerisation domain) in DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein. Showing 1 copy in chain U [auth K].

PF01194
Domain description: RNA polymerases N / 8 kDa subunit
Occurring in:
  1. DNA-directed RNA polymerases I, II, and III subunit RPABC5
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF01194 (RNA polymerases N / 8 kDa subunit) in DNA-directed RNA polymerases I, II, and III subunit RPABC5. Showing 1 copy in chain T [auth J].

PF01096
Domain description: Transcription factor S-II (TFIIS)
Occurring in:
  1. DNA-directed RNA polymerase II subunit RPB9
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF01096 (Transcription factor S-II (TFIIS)) in DNA-directed RNA polymerase II subunit RPB9. Showing 1 copy in chain S [auth I].

PF02150
Domain description: RNA polymerases M/15 Kd subunit
Occurring in:
  1. DNA-directed RNA polymerase II subunit RPB9
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF02150 (RNA polymerases M/15 Kd subunit) in DNA-directed RNA polymerase II subunit RPB9. Showing 1 copy in chain S [auth I].

PF03870
Domain description: RNA polymerase Rpb8
Occurring in:
  1. DNA-directed RNA polymerases I, II, and III subunit RPABC3
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF03870 (RNA polymerase Rpb8) in DNA-directed RNA polymerases I, II, and III subunit RPABC3. Showing 1 copy in chain R [auth H].

PF00575
Domain description: S1 RNA binding domain
Occurring in:
  1. DNA-directed RNA polymerase subunit
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF00575 (S1 RNA binding domain) in DNA-directed RNA polymerase subunit. Showing 1 copy in chain Q [auth G].

PF03876
Domain description: SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
Occurring in:
  1. DNA-directed RNA polymerase subunit
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF03876 (SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397) in DNA-directed RNA polymerase subunit. Showing 1 copy in chain Q [auth G].

PF01192
Domain description: RNA polymerase Rpb6
Occurring in:
  1. DNA-directed RNA polymerases I, II, and III subunit RPABC2
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF01192 (RNA polymerase Rpb6 ) in DNA-directed RNA polymerases I, II, and III subunit RPABC2. Showing 1 copy in chain P [auth F].

PF01191
Domain description: RNA polymerase Rpb5, C-terminal domain
Occurring in:
  1. DNA-directed RNA polymerase II subunit E
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF01191 (RNA polymerase Rpb5, C-terminal domain) in DNA-directed RNA polymerase II subunit E. Showing 1 copy in chain O [auth E].

PF03871
Domain description: RNA polymerase Rpb5, N-terminal domain
Occurring in:
  1. DNA-directed RNA polymerase II subunit E
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF03871 (RNA polymerase Rpb5, N-terminal domain) in DNA-directed RNA polymerase II subunit E. Showing 1 copy in chain O [auth E].

PF03874
Domain description: RNA polymerase Rpb4
Occurring in:
  1. RNA polymerase Rpb4/RPC9 core domain-containing protein
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF03874 (RNA polymerase Rpb4) in RNA polymerase Rpb4/RPC9 core domain-containing protein. Showing 1 copy in chain N [auth D].

PF01000
Domain description: RNA polymerase Rpb3/RpoA insert domain
Occurring in:
  1. DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF01000 (RNA polymerase Rpb3/RpoA insert domain) in DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein. Showing 1 copy in chain M [auth C].

PF01193
Domain description: RNA polymerase Rpb3/Rpb11 dimerisation domain
Occurring in:
  1. DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF01193 (RNA polymerase Rpb3/Rpb11 dimerisation domain) in DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein. Showing 1 copy in chain M [auth C].

PF04560
Domain description: RNA polymerase Rpb2, domain 7
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF04560 (RNA polymerase Rpb2, domain 7) in DNA-directed RNA polymerase subunit beta. Showing 1 copy in chain L [auth B].

PF00562
Domain description: RNA polymerase Rpb2, domain 6
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF00562 (RNA polymerase Rpb2, domain 6) in DNA-directed RNA polymerase subunit beta. Showing 1 copy in chain L [auth B].

PF04567
Domain description: RNA polymerase Rpb2, domain 5
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF04567 (RNA polymerase Rpb2, domain 5) in DNA-directed RNA polymerase subunit beta. Showing 1 copy in chain L [auth B].

PF04566
Domain description: RNA polymerase Rpb2, domain 4
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF04566 (RNA polymerase Rpb2, domain 4) in DNA-directed RNA polymerase subunit beta. Showing 1 copy in chain L [auth B].

PF04565
Domain description: RNA polymerase Rpb2, domain 3
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF04565 (RNA polymerase Rpb2, domain 3) in DNA-directed RNA polymerase subunit beta. Showing 1 copy in chain L [auth B].

PF04561
Domain description: RNA polymerase Rpb2, domain 2
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF04561 (RNA polymerase Rpb2, domain 2) in DNA-directed RNA polymerase subunit beta. Showing 1 copy in chain L [auth B].

PF04563
Domain description: RNA polymerase beta subunit
Occurring in:
  1. DNA-directed RNA polymerase subunit beta
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF04563 (RNA polymerase beta subunit) in DNA-directed RNA polymerase subunit beta. Showing 1 copy in chain L [auth B].

PF04990
Domain description: RNA polymerase Rpb1, domain 7
Occurring in:
  1. DNA-directed RNA polymerase subunit
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF04990 (RNA polymerase Rpb1, domain 7) in DNA-directed RNA polymerase subunit. Showing 1 copy in chain K [auth A].

PF04992
Domain description: RNA polymerase Rpb1, domain 6
Occurring in:
  1. DNA-directed RNA polymerase subunit
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF04992 (RNA polymerase Rpb1, domain 6) in DNA-directed RNA polymerase subunit. Showing 1 copy in chain K [auth A].

PF04998
Domain description: RNA polymerase Rpb1, domain 5
Occurring in:
  1. DNA-directed RNA polymerase subunit
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF04998 (RNA polymerase Rpb1, domain 5) in DNA-directed RNA polymerase subunit. Showing 1 copy in chain K [auth A].

PF05000
Domain description: RNA polymerase Rpb1, domain 4
Occurring in:
  1. DNA-directed RNA polymerase subunit
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF05000 (RNA polymerase Rpb1, domain 4) in DNA-directed RNA polymerase subunit. Showing 1 copy in chain K [auth A].

PF04983
Domain description: RNA polymerase Rpb1, domain 3
Occurring in:
  1. DNA-directed RNA polymerase subunit
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF04983 (RNA polymerase Rpb1, domain 3) in DNA-directed RNA polymerase subunit. Showing 1 copy in chain K [auth A].

PF00623
Domain description: RNA polymerase Rpb1, domain 2
Occurring in:
  1. DNA-directed RNA polymerase subunit
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF00623 (RNA polymerase Rpb1, domain 2) in DNA-directed RNA polymerase subunit. Showing 1 copy in chain K [auth A].

PF04997
Domain description: RNA polymerase Rpb1, domain 1
Occurring in:
  1. DNA-directed RNA polymerase subunit
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF04997 (RNA polymerase Rpb1, domain 1) in DNA-directed RNA polymerase subunit. Showing 1 copy in chain K [auth A].

PF16899
Domain description: Cyclin C-terminal domain
Occurring in:
  1. Cyclin-H
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF16899 (Cyclin C-terminal domain) in Cyclin-H. Showing 1 copy in chain J [auth 9].

PF00134
Domain description: Cyclin, N-terminal domain
Occurring in:
  1. Cyclin-H
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF00134 (Cyclin, N-terminal domain) in Cyclin-H. Showing 1 copy in chain J [auth 9].

PF00069
Domain description: Protein kinase domain
Occurring in:
  1. Cyclin-dependent kinase 7
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF00069 (Protein kinase domain) in Cyclin-dependent kinase 7. Showing 1 copy in chain I [auth 8].

PF06391
Domain description: CDK-activating kinase assembly factor MAT1
Occurring in:
  1. CDK-activating kinase assembly factor MAT1
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF06391 (CDK-activating kinase assembly factor MAT1) in CDK-activating kinase assembly factor MAT1. Showing 1 copy in chain H [auth 7].

PF17121
Domain description: Zinc finger, C3HC4 type (RING finger)
Occurring in:
  1. CDK-activating kinase assembly factor MAT1
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF17121 (Zinc finger, C3HC4 type (RING finger)) in CDK-activating kinase assembly factor MAT1. Showing 1 copy in chain H [auth 7].

PF06331
Domain description: Transcription factor TFIIH complex subunit Tfb5
Occurring in:
  1. General transcription factor IIH subunit 5
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF06331 (Transcription factor TFIIH complex subunit Tfb5) in General transcription factor IIH subunit 5. Showing 1 copy in chain G [auth 6].

PF03850
Domain description: Transcription factor Tfb4
Occurring in:
  1. General transcription factor IIH subunit 3
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF03850 (Transcription factor Tfb4) in General transcription factor IIH subunit 3. Showing 1 copy in chain F [auth 5].

PF07975
Domain description: TFIIH C1-like domain
Occurring in:
  1. General transcription factor IIH subunit 2
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF07975 (TFIIH C1-like domain) in General transcription factor IIH subunit 2. Showing 1 copy in chain E [auth 4].

PF04056
Domain description: Ssl1-like
Occurring in:
  1. General transcription factor IIH subunit 2
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF04056 (Ssl1-like) in General transcription factor IIH subunit 2. Showing 1 copy in chain E [auth 4].

PF18307
Domain description: Transcription factor Tfb2 (p52) C-terminal domain
Occurring in:
  1. General transcription factor IIH subunit 4
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF18307 (Transcription factor Tfb2 (p52) C-terminal domain) in General transcription factor IIH subunit 4. Showing 1 copy in chain D [auth 3].

PF03849
Domain description: Transcription factor Tfb2
Occurring in:
  1. General transcription factor IIH subunit 4
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF03849 (Transcription factor Tfb2) in General transcription factor IIH subunit 4. Showing 1 copy in chain D [auth 3].

PF03909
Domain description: BSD domain
Occurring in:
  1. General transcription factor IIH subunit 1
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF03909 (BSD domain ) in General transcription factor IIH subunit 1. Showing 1 copy in chain C [auth 2].

PF08567
Domain description: TFIIH p62 subunit, N-terminal domain
Occurring in:
  1. General transcription factor IIH subunit 1
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF08567 (TFIIH p62 subunit, N-terminal domain) in General transcription factor IIH subunit 1. Showing 1 copy in chain C [auth 2] (this domain is out of the observed residue ranges!).

PF13307
Domain description: Helicase C-terminal domain
Occurring in:
  1. General transcription and DNA repair factor IIH helicase subunit XPD
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF13307 (Helicase C-terminal domain) in General transcription and DNA repair factor IIH helicase subunit XPD. Showing 1 copy in chain B [auth 1].

PF06777
Domain description: Helical and beta-bridge domain
Occurring in:
  1. General transcription and DNA repair factor IIH helicase subunit XPD
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF06777 (Helical and beta-bridge domain) in General transcription and DNA repair factor IIH helicase subunit XPD. Showing 1 copy in chain B [auth 1].

PF06733
Domain description: DEAD_2
Occurring in:
  1. General transcription and DNA repair factor IIH helicase subunit XPD
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF06733 (DEAD_2) in General transcription and DNA repair factor IIH helicase subunit XPD. Showing 1 copy in chain B [auth 1].

PF16203
Domain description: ERCC3/RAD25/XPB C-terminal helicase
Occurring in:
  1. General transcription and DNA repair factor IIH helicase/translocase subunit XPB
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF16203 (ERCC3/RAD25/XPB C-terminal helicase) in General transcription and DNA repair factor IIH helicase/translocase subunit XPB. Showing 1 copy in chain A [auth 0].

PF04851
Domain description: Type III restriction enzyme, res subunit
Occurring in:
  1. General transcription and DNA repair factor IIH helicase/translocase subunit XPB
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF04851 (Type III restriction enzyme, res subunit) in General transcription and DNA repair factor IIH helicase/translocase subunit XPB. Showing 1 copy in chain A [auth 0].

PF13625
Domain description: Helicase conserved C-terminal domain
Occurring in:
  1. General transcription and DNA repair factor IIH helicase/translocase subunit XPB
The deposited structure of PDB entry 8byq contains 1 copy of Pfam domain PF13625 (Helicase conserved C-terminal domain) in General transcription and DNA repair factor IIH helicase/translocase subunit XPB. Showing 1 copy in chain A [auth 0].

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