› 8cnr

X-ray diffraction
1.45Å resolution

Hybrid Cluster Protein from the thermophilic methanogen Methanothermococcus thermolithotrophicus as isolated in a reduced state at 1.45-A resolution

Released:
DOI: 10.2210/pdb8cnr/pdb
PDB entry 8cnr coloured by chain, front view.
PDB entry 8cnr coloured by chain, side view.
PDB entry 8cnr coloured by chain, top view.
Source organism: Methanothermococcus thermolithotrophicus DSM 2095
Primary publication:
Structural and biochemical elucidation of class I hybrid cluster protein natively extracted from a marine methanogenic archaeon.
Lemaire ON, Belhamri M, Wagner T
Front Microbiol 14 1179204 (2023)
PMID: 37250035

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-211863 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Hybrid cluster protein from the thermophilic methanogen Methanothermococcus thermolithotrophicus Chain: A
Molecule details ›
Chain: A
Length: 548 amino acids
Theoretical weight: 60.34 KDa
Source organism: Methanothermococcus thermolithotrophicus DSM 2095

Ligands and Environments

9 bound ligands:
Ligand MG 4 x MG
Ligand ACT 1 x ACT
Ligand SF4 1 x SF4
Ligand ETX 1 x ETX
Ligand FMT 3 x FMT
Ligand EDO 1 x EDO
Ligand GOL 3 x GOL
Ligand SF3 1 x SF3
Ligand MRD 1 x MRD
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: P21212
Unit cell:
a: 97.557Å b: 102.454Å c: 58.896Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.134 0.133 0.152

Quick links

Citations

1 citations in other articles

Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases.
Fujishiro et al. (2023)

2 mentions without citation

Raman Fingerprints of Atomically Precise Graphene Nanoribbons.
Verzhbitskiy et al. (2016)
1 more