8coa

Electron Microscopy
4.5Å resolution

in situ Subtomogram average of Immature Rotavirus TLP spike

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 29-mer (preferred)
PDBe Complex ID:
PDB-CPX-214557 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Outer capsid protein VP4 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 776 amino acids
Theoretical weight: 86.77 KDa
Source organism: Rotavirus A
Expression system: Chlorocebus aethiops aethiops
UniProt:
  • Canonical: A0A1Q2TSK9 (Residues: 1-776; Coverage: 100%)
Gene name: VP4
Sequence domains:
Outer capsid glycoprotein VP7 Chains: D, E, F, G, H, I, J, K, L, M, N, O, P
Molecule details ›
Chains: D, E, F, G, H, I, J, K, L, M, N, O, P
Length: 326 amino acids
Theoretical weight: 37.23 KDa
Source organism: Rotavirus A
Expression system: Chlorocebus aethiops aethiops
UniProt:
  • Canonical: A0A1Q2TSM6 (Residues: 1-326; Coverage: 100%)
Gene name: VP7
Sequence domains: Glycoprotein VP7
Intermediate capsid protein VP6 Chains: d, e, f, g, h, i, j, k, l, m, n, o, p
Molecule details ›
Chains: d, e, f, g, h, i, j, k, l, m, n, o, p
Length: 397 amino acids
Theoretical weight: 44.91 KDa
Source organism: Rotavirus A
Expression system: Chlorocebus aethiops aethiops
UniProt:
  • Canonical: A2T3S6 (Residues: 1-397; Coverage: 100%)
Gene name: VP6
Sequence domains: Rotavirus major capsid protein VP6

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.5Å
Relevant EMDB volumes: EMD-16774
Expression system: Chlorocebus aethiops aethiops