› 8d8d

X-ray diffraction
1.5Å resolution

Crystal structure of hen egg white lysozyme at 300 Kelvin (Duplicate)

Released:
DOI: 10.2210/pdb8d8d/pdb
PDB entry 8d8d coloured by chain, front view.
PDB entry 8d8d coloured by chain, side view.
PDB entry 8d8d coloured by chain, top view.
Source organism: Gallus gallus
Primary publication:
Linking B-factor and temperature-induced conformational transition.
de Sá Ribeiro F, Lima LMTR
Biophys Chem 298 107027 (2023)
PMID: 37172417

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132831 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysozyme C Chain: A
Molecule details ›
Chain: A
Length: 129 amino acids
Theoretical weight: 14.33 KDa
Source organism: Gallus gallus
Expression system: Escherichia coli
UniProt:
  • Canonical: P00698 (Residues: 19-147; Coverage: 100%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family

Ligands and Environments

3 bound ligands:
Ligand NA 1 x NA
Ligand CL 7 x CL
Ligand GOL 2 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BRUKER TURBO X-RAY SOURCE
Spacegroup: P43212
Unit cell:
a: 79.484Å b: 79.484Å c: 37.86Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.178 0.176 0.203
Expression system: Escherichia coli

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Citations

1 review citation

A snapshot love story: what serial crystallography has done and will do for us.
Henkel et al. (2024)
1 other article