8d9v

Electron Microscopy
9.4Å resolution

gamma-Arf1 homodimeric interface within AP-1, Arf1, Nef lattice on narrow membrane tubes

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero octadecamer (preferred)
PDBe Complex ID:
PDB-CPX-269627 (preferred)
Entry contents:
7 distinct polypeptide molecules
Macromolecules (7 distinct):
ADP-ribosylation factor Chains: C, D, F, H
Molecule details ›
Chains: C, D, F, H
Length: 181 amino acids
Theoretical weight: 20.72 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A8C2UGL4 (Residues: 1-181; Coverage: 100%)
Gene name: ARF1
Sequence domains: ADP-ribosylation factor family
Protein Nef Chains: I, K, L, N
Molecule details ›
Chains: I, K, L, N
Length: 213 amino acids
Theoretical weight: 24.29 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q90VU7 (Residues: 1-206; Coverage: 100%)
Gene name: nef
Sequence domains: Negative factor, (F-Protein) or Nef
HLA class I histocompatibility antigen, A alpha chain Chains: P, Y
AP-1 complex subunit beta-1 Chains: A, B
AP-1 complex subunit gamma-1 Chains: E, G
AP-1 complex subunit mu-1 Chains: J, M
AP-1 complex subunit sigma-3 Chains: O, S

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this EM entry.
Resolution: 9.4Å
Relevant EMDB volumes: EMD-27187
Expression system: Escherichia coli BL21(DE3)