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V-K CAST Transpososome from Scytonema hofmanni, minor configuration

Source organisms:
Biochemical function: nucleic acid binding
Biological process: DNA integration
Cellular component: ribonucleoprotein complex

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GO terms

Sequence families

Pfam Protein families (Pfam)
PF05621
Domain description: Bacterial TniB protein
Occurring in:
  1. Transposase
The deposited structure of PDB entry 8ea4 contains 13 copies of Pfam domain PF05621 (Bacterial TniB protein) in Transposase. Showing 1 copy in chain A.

PF09299
Domain description: Mu transposase, C-terminal
Occurring in:
  1. Integrase catalytic domain-containing protein
The deposited structure of PDB entry 8ea4 contains 8 copies of Pfam domain PF09299 (Mu transposase, C-terminal) in Integrase catalytic domain-containing protein. Showing 1 copy in chain Q [auth W].

PF13384
Domain description: Homeodomain-like domain
Occurring in:
  1. Integrase catalytic domain-containing protein
The deposited structure of PDB entry 8ea4 contains 8 copies of Pfam domain PF13384 (Homeodomain-like domain) in Integrase catalytic domain-containing protein. Showing 1 copy in chain Q [auth W].

PF00312
Domain description: Ribosomal protein S15
Occurring in:
  1. Small ribosomal subunit protein uS15
The deposited structure of PDB entry 8ea4 contains 1 copy of Pfam domain PF00312 (Ribosomal protein S15) in Small ribosomal subunit protein uS15. Showing 1 copy in chain P [auth S].

PF06527
Domain description: TniQ
Occurring in:
  1. Transcriptional regulator
The deposited structure of PDB entry 8ea4 contains 1 copy of Pfam domain PF06527 (TniQ) in Transcriptional regulator. Showing 1 copy in chain O [auth Q].

InterPro InterPro annotations
IPR027417
Domain description: P-loop containing nucleoside triphosphate hydrolase
Occurring in:
  1. Transposase
IPR009004
Domain description: Transposase, Mu, C-terminal
Occurring in:
  1. Integrase catalytic domain-containing protein
IPR001584
Domain description: Integrase, catalytic core
Occurring in:
  1. Integrase catalytic domain-containing protein
IPR008868
Domain description: Bacterial TniB
Occurring in:
  1. Transposase
IPR015378
Domain description: Transposase-like, Mu, C-terminal
Occurring in:
  1. Integrase catalytic domain-containing protein
IPR012337
Domain description: Ribonuclease H-like superfamily
Occurring in:
  1. Integrase catalytic domain-containing protein
IPR036397
Domain description: Ribonuclease H superfamily
Occurring in:
  1. Integrase catalytic domain-containing protein
IPR009057
Domain description: Homedomain-like superfamily
Occurring in:
  1. Integrase catalytic domain-containing protein
IPR000589
Domain description: Small ribosomal subunit protein uS15
Occurring in:
  1. Small ribosomal subunit protein uS15
IPR005290
Domain description: Small ribosomal subunit protein uS15, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS15
IPR009068
Domain description: uS15/NS1, RNA-binding domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS15
IPR009492
Domain description: TniQ
Occurring in:
  1. Transcriptional regulator

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