› 8ep9

Electron Microscopy
3.12Å resolution

The capsid structure of Human Parvovirus 4

Released:
DOI: 10.2210/pdb8ep9/pdb
PDB entry 8ep9 coloured by chain, front view.
PDB entry 8ep9 coloured by chain, side view.
PDB entry 8ep9 coloured by chain, top view.
Source organism: Human parvovirus 4
Primary publication:
Capsid Structure of Aleutian Mink Disease Virus and Human Parvovirus 4: New Faces in the Parvovirus Family Portrait.
Lakshmanan R, Mietzsch M, Jimenez Ybargollin A, Chipman P, Fu X, Qiu J, Söderlund-Venermo M, McKenna R
OpenAccess logo Viruses 14 (2022)
PMID: 36298773
Related structures: EMD-28522

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo 60-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-269881 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
ORF2 Chains: 1, 2, 3, 4, 5, 6, 7, 8, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z
Molecule details ›
Chains: 1, 2, 3, 4, 5, 6, 7, 8, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z
Length: 552 amino acids
Theoretical weight: 61.69 KDa
Source organism: Human parvovirus 4
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: A7J3Q7 (Residues: 363-914; Coverage: 60%)
Sequence domains: Parvovirus coat protein VP2

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.12Å
Relevant EMDB volumes: EMD-28522
Expression system: Spodoptera frugiperda

Quick links

Citations

1 citations in other articles

Structural Characterization of Canine Minute Virus, Rat and Porcine Bocavirus.
Velez et al. (2023)