› 8erf

X-ray diffraction
1.47Å resolution

HTLV-1 capsid protein N-terminal domain orthorhombic crystal form

Released:
DOI: 10.2210/pdb8erf/pdb
PDB entry 8erf coloured by chain, front view.
PDB entry 8erf coloured by chain, side view.
PDB entry 8erf coloured by chain, top view.
Source organism: HTLV-1 subtype C
Entry authors: Yu RJ, Li N, Jacques DA

Function and Biology Details

Reactions catalysed: 
Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
Endonucleolytic cleavage to 5'-phosphomonoester.
Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-272670 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein p24 Chains: A, B
Molecule details ›
Chains: A, B
Length: 127 amino acids
Theoretical weight: 14.14 KDa
Source organism: HTLV-1 subtype C
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P0C211 (Residues: 131-257; Coverage: 9%)
Gene name: gag-pro-pol
Sequence domains: gag protein p24 N-terminal domain

Ligands and Environments

1 bound ligand:
Ligand SO4 1 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Spacegroup: P212121
Unit cell:
a: 30.769Å b: 77.323Å c: 101.905Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.184 0.182 0.207
Expression system: Escherichia coli BL21(DE3)

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