8euy

Electron Microscopy
3Å resolution

Ytm1 associated nascent 60S ribosome (-fkbp39) State 1A

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 40-mer (preferred)
PDBe Complex ID:
PDB-CPX-126902 (preferred)
Entry contents:
37 distinct polypeptide molecules
3 distinct RNA molecules
Macromolecules (40 distinct):
Protein mak16 Chain: 3
Molecule details ›
Chain: 3
Length: 302 amino acids
Theoretical weight: 35.69 KDa
Source organism: Schizosaccharomyces pombe
UniProt:
  • Canonical: Q9UTE6 (Residues: 1-302; Coverage: 100%)
Gene names: SPAC222.06, mak16
Sequence domains:
Ribosomal RNA-processing protein 1 homolog Chain: 4
Molecule details ›
Chain: 4
Length: 217 amino acids
Theoretical weight: 25.78 KDa
Source organism: Schizosaccharomyces pombe
UniProt:
  • Canonical: Q9Y7M6 (Residues: 1-217; Coverage: 100%)
Gene name: SPBC9B6.07
Sequence domains: Nucleolar protein,Nop52
Ribosome biogenesis protein nsa1 Chain: 5
Ribosome biogenesis protein brx1 Chain: A
Large ribosomal subunit protein uL3A Chain: B
Large ribosomal subunit protein uL4B Chain: C
ATP-dependent RNA helicase has1 Chain: D
Large ribosomal subunit protein eL6 Chain: E
Large ribosomal subunit protein uL30B Chain: F
Large ribosomal subunit protein eL8 Chain: G
Large ribosomal subunit protein uL6A Chain: H
Probable rRNA-processing protein ebp2 Chain: J
Putative ribosome biogenesis protein C8F11.04 Chain: K
Large ribosomal subunit protein eL13 Chain: L
Large ribosomal subunit protein eL14 Chain: M
Large ribosomal subunit protein eL15A Chain: N
Large ribosomal subunit protein uL13B Chain: O
Large ribosomal subunit protein uL22A Chain: P
Large ribosomal subunit protein eL18A Chain: Q
Large ribosomal subunit protein eL20A Chain: S
Large ribosomal subunit protein uL14A Chain: V
Large ribosomal subunit protein uL24 Chain: Y
Probable nucleolar GTP-binding protein 1 Chain: b
Large ribosomal subunit protein eL32A Chain: e
Large ribosomal subunit protein eL33B Chain: f
Large ribosomal subunit protein uL29 Chain: h
Large ribosomal subunit protein eL36B Chain: i
Large ribosomal subunit protein eL37B Chain: j
Ribosome biogenesis protein erb1 Chain: m
Uncharacterized RNA-binding protein C1827.05c Chain: o
Ribosome biogenesis protein nsa2 Chain: r
Large ribosomal subunit protein uL30A Chain: t
Ribosome biogenesis protein rlp24 Chain: u
Nucleolar protein 16 Chain: v
Brix domain-containing protein C4F8.04 Chain: x
Eukaryotic translation initiation factor 6 Chain: y
Large ribosomal subunit protein eL21A Chain: T
RNA (1095-MER) Chain: 1
RNA (148-MER) Chain: 2
RNA (93-MER) Chain: 6

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution:
Relevant EMDB volumes: EMD-24420