Function and Biology

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Source organism: Saccharomyces cerevisiae
Biochemical function: structural constituent of ribosome
Biological process: translation
Cellular component: ribosome

GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF00400
Domain description: WD domain, G-beta repeat
Occurring in:
  1. Small ribosomal subunit protein RACK1
The deposited structure of PDB entry 8evp contains 6 copies of Pfam domain PF00400 (WD domain, G-beta repeat) in Small ribosomal subunit protein RACK1. Showing 6 copies in chain EA [auth Bg].

PF01479
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01479 (S4 domain) in Small ribosomal subunit protein eS4A. Showing 1 copy in chain D [auth BE].
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01479 (S4 domain) in Small ribosomal subunit protein uS4A. Showing 1 copy in chain H [auth BJ].

PF00318
Domain description: Ribosomal protein S2
Occurring in:
  1. Small ribosomal subunit protein uS2A
The deposited structure of PDB entry 8evp contains 2 copies of Pfam domain PF00318 (Ribosomal protein S2) in Small ribosomal subunit protein uS2A. Showing 2 copies in chain A [auth BA].

PF00347
Domain description: Ribosomal protein L6
Occurring in:
  1. Large ribosomal subunit protein uL6A
The deposited structure of PDB entry 8evp contains 2 copies of Pfam domain PF00347 (Ribosomal protein L6) in Large ribosomal subunit protein uL6A. Showing 2 copies in chain SA [auth AH].

PF01248
Domain description: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Occurring in:
  1. Large ribosomal subunit protein eL8A
  2. Large ribosomal subunit protein eL30
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in 40S ribosomal protein S12. Showing 1 copy in chain GA [auth BM].
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in Large ribosomal subunit protein eL8A. Showing 1 copy in chain RA [auth AG].
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in Large ribosomal subunit protein eL30. Showing 1 copy in chain MB [auth Ac].

PF04758
Domain description: Ribosomal protein S30
Occurring in:
  1. Small ribosomal subunit protein eS30A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF04758 (Ribosomal protein S30) in Small ribosomal subunit protein eS30A. Showing 1 copy in chain R [auth Be].

PF01667
Domain description: Ribosomal protein S27
Occurring in:
  1. Small ribosomal subunit protein eS27A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01667 (Ribosomal protein S27) in Small ribosomal subunit protein eS27A. Showing 1 copy in chain Q [auth Bb].

PF01282
Domain description: Ribosomal protein S24e
Occurring in:
  1. Small ribosomal subunit protein eS24A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01282 (Ribosomal protein S24e) in Small ribosomal subunit protein eS24A. Showing 1 copy in chain O [auth BY].

PF00164
Domain description: Ribosomal protein S12/S23
Occurring in:
  1. Small ribosomal subunit protein uS12A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00164 (Ribosomal protein S12/S23) in Small ribosomal subunit protein uS12A. Showing 1 copy in chain N [auth BX].

PF01249
Domain description: Ribosomal protein S21e
Occurring in:
  1. Small ribosomal subunit protein eS21A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01249 (Ribosomal protein S21e) in Small ribosomal subunit protein eS21A. Showing 1 copy in chain L [auth BV].

PF01090
Domain description: Ribosomal protein S19e
Occurring in:
  1. Small ribosomal subunit protein eS19A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01090 (Ribosomal protein S19e) in Small ribosomal subunit protein eS19A. Showing 1 copy in chain Z [auth BT].

PF00416
Domain description: Ribosomal protein S13/S18
Occurring in:
  1. Small ribosomal subunit protein uS13A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00416 (Ribosomal protein S13/S18) in Small ribosomal subunit protein uS13A. Showing 1 copy in chain Y [auth BS].

PF00833
Domain description: Ribosomal S17
Occurring in:
  1. Small ribosomal subunit protein eS17A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00833 (Ribosomal S17) in Small ribosomal subunit protein eS17A. Showing 1 copy in chain X [auth BR].

PF00380
Domain description: Ribosomal protein S9/S16
Occurring in:
  1. Small ribosomal subunit protein uS9A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00380 (Ribosomal protein S9/S16) in Small ribosomal subunit protein uS9A. Showing 1 copy in chain W [auth BQ].

PF00411
Domain description: Ribosomal protein S11
Occurring in:
  1. Small ribosomal subunit protein uS11A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00411 (Ribosomal protein S11) in Small ribosomal subunit protein uS11A. Showing 1 copy in chain K [auth BO].

PF00312
Domain description: Ribosomal protein S15
Occurring in:
  1. Small ribosomal subunit protein uS15
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00312 (Ribosomal protein S15) in Small ribosomal subunit protein uS15. Showing 1 copy in chain J [auth BN].

PF08069
Domain description: Ribosomal S13/S15 N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS15
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF08069 (Ribosomal S13/S15 N-terminal domain) in Small ribosomal subunit protein uS15. Showing 1 copy in chain J [auth BN].

PF00366
Domain description: Ribosomal protein S17
Occurring in:
  1. Small ribosomal subunit protein uS17A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00366 (Ribosomal protein S17) in Small ribosomal subunit protein uS17A. Showing 1 copy in chain I [auth BL].

PF16205
Domain description: Ribosomal_S17 N-terminal
Occurring in:
  1. Small ribosomal subunit protein uS17A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF16205 (Ribosomal_S17 N-terminal) in Small ribosomal subunit protein uS17A. Showing 1 copy in chain I [auth BL].

PF03501
Domain description: Plectin/S10 domain
Occurring in:
  1. Small ribosomal subunit protein eS10A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF03501 (Plectin/S10 domain) in Small ribosomal subunit protein eS10A. Showing 1 copy in chain U [auth BK].

PF00163
Domain description: Ribosomal protein S4/S9 N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS4A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00163 (Ribosomal protein S4/S9 N-terminal domain) in Small ribosomal subunit protein uS4A. Showing 1 copy in chain H [auth BJ].

PF01201
Domain description: Ribosomal protein S8e
Occurring in:
  1. Small ribosomal subunit protein eS8A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01201 (Ribosomal protein S8e) in Small ribosomal subunit protein eS8A. Showing 1 copy in chain G [auth BI].

PF01251
Domain description: Ribosomal protein S7e
Occurring in:
  1. Small ribosomal subunit protein eS7A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01251 (Ribosomal protein S7e) in Small ribosomal subunit protein eS7A. Showing 1 copy in chain F [auth BH].

PF01092
Domain description: Ribosomal protein S6e
Occurring in:
  1. Small ribosomal subunit protein eS6A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01092 (Ribosomal protein S6e) in Small ribosomal subunit protein eS6A. Showing 1 copy in chain E [auth BG].

PF00177
Domain description: Ribosomal protein S7p/S5e
Occurring in:
  1. Rps5p
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00177 (Ribosomal protein S7p/S5e) in Small ribosomal subunit protein uS7 domain-containing protein. Showing 1 copy in chain T [auth BF].

PF16121
Domain description: 40S ribosomal protein S4 C-terminus
Occurring in:
  1. Small ribosomal subunit protein eS4A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF16121 (40S ribosomal protein S4 C-terminus) in Small ribosomal subunit protein eS4A. Showing 1 copy in chain D [auth BE].

PF00900
Domain description: Ribosomal family S4e
Occurring in:
  1. Small ribosomal subunit protein eS4A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00900 (Ribosomal family S4e) in Small ribosomal subunit protein eS4A. Showing 1 copy in chain D [auth BE].

PF08071
Domain description: RS4NT (NUC023) domain
Occurring in:
  1. Small ribosomal subunit protein eS4A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF08071 (RS4NT (NUC023) domain) in Small ribosomal subunit protein eS4A. Showing 1 copy in chain D [auth BE].

PF01780
Domain description: Ribosomal L37ae protein family
Occurring in:
  1. Large ribosomal subunit protein eL43A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01780 (Ribosomal L37ae protein family) in Large ribosomal subunit protein eL43A. Showing 1 copy in chain ZB [auth Ap].

PF00935
Domain description: Ribosomal protein L44
Occurring in:
  1. Large ribosomal subunit protein eL42A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00935 (Ribosomal protein L44) in Large ribosomal subunit protein eL42A. Showing 1 copy in chain YB [auth Ao].

PF05162
Domain description: Ribosomal protein L41
Occurring in:
  1. Small ribosomal subunit protein eS32A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF05162 (Ribosomal protein L41) in Large ribosomal subunit protein eL41A. Showing 1 copy in chain XB [auth An].

PF01020
Domain description: Ribosomal L40e family
Occurring in:
  1. Ubiquitin-ribosomal protein eL40A fusion protein
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01020 (Ribosomal L40e family) in Ubiquitin-ribosomal protein eL40A fusion protein. Showing 1 copy in chain WB [auth Am].

PF00240
Domain description: Ubiquitin family
Occurring in:
  1. Ubiquitin-ribosomal protein eL40A fusion protein
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00240 (Ubiquitin family) in RPS31 isoform 1. Showing 1 copy in chain FA [auth Bf] (this domain is out of the observed residue ranges!).
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00240 (Ubiquitin family) in Ubiquitin-ribosomal protein eL40A fusion protein. Showing 1 copy in chain WB [auth Am] (this domain is out of the observed residue ranges!).

PF00832
Domain description: Ribosomal L39 protein
Occurring in:
  1. Large ribosomal subunit protein eL39
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00832 (Ribosomal L39 protein) in Large ribosomal subunit protein eL39. Showing 1 copy in chain VB [auth Al].

PF01907
Domain description: Ribosomal protein L37e
Occurring in:
  1. Large ribosomal subunit protein eL37A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01907 (Ribosomal protein L37e) in Large ribosomal subunit protein eL37A. Showing 1 copy in chain TB [auth Aj].

PF01158
Domain description: Ribosomal protein L36e
Occurring in:
  1. Large ribosomal subunit protein eL36A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01158 (Ribosomal protein L36e) in Large ribosomal subunit protein eL36A. Showing 1 copy in chain SB [auth Ai].

PF00831
Domain description: Ribosomal L29 protein
Occurring in:
  1. Large ribosomal subunit protein uL29A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00831 (Ribosomal L29 protein) in Large ribosomal subunit protein uL29A. Showing 1 copy in chain RB [auth Ah].

PF01199
Domain description: Ribosomal protein L34e
Occurring in:
  1. Large ribosomal subunit protein eL34A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01199 (Ribosomal protein L34e) in Large ribosomal subunit protein eL34A. Showing 1 copy in chain QB [auth Ag].

PF01247
Domain description: Ribosomal protein L35Ae
Occurring in:
  1. Large ribosomal subunit protein eL33A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01247 (Ribosomal protein L35Ae) in Large ribosomal subunit protein eL33A. Showing 1 copy in chain PB [auth Af].

PF01198
Domain description: Ribosomal protein L31e
Occurring in:
  1. Large ribosomal subunit protein eL31A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01198 (Ribosomal protein L31e) in Large ribosomal subunit protein eL31A. Showing 1 copy in chain NB [auth Ad].

PF00828
Domain description: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Occurring in:
  1. Large ribosomal subunit protein uL15
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00828 (Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A) in Large ribosomal subunit protein uL15. Showing 1 copy in chain KB [auth Aa].

PF01777
Domain description: Ribosomal L27e protein family
Occurring in:
  1. Large ribosomal subunit protein eL27A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01777 (Ribosomal L27e protein family) in Large ribosomal subunit protein eL27A. Showing 1 copy in chain JB [auth AZ].

PF16906
Domain description: Ribosomal proteins L26 eukaryotic, L24P archaeal
Occurring in:
  1. Large ribosomal subunit protein uL24A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF16906 (Ribosomal proteins L26 eukaryotic, L24P archaeal) in Large ribosomal subunit protein uL24A. Showing 1 copy in chain IB [auth AY].

PF00276
Domain description: Ribosomal protein L23
Occurring in:
  1. Large ribosomal subunit protein uL23
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00276 (Ribosomal protein L23) in Large ribosomal subunit protein uL23. Showing 1 copy in chain HB [auth AX].

PF03939
Domain description: Ribosomal protein L23, N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL23
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF03939 (Ribosomal protein L23, N-terminal domain) in Large ribosomal subunit protein uL23. Showing 1 copy in chain HB [auth AX].

PF00238
Domain description: Ribosomal protein L14p/L23e
Occurring in:
  1. Large ribosomal subunit protein uL14A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00238 (Ribosomal protein L14p/L23e) in Large ribosomal subunit protein uL14A. Showing 1 copy in chain FB [auth AV].

PF01776
Domain description: Ribosomal L22e protein family
Occurring in:
  1. Large ribosomal subunit protein eL22A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01776 (Ribosomal L22e protein family) in Large ribosomal subunit protein eL22A. Showing 1 copy in chain EB [auth AU].

PF01157
Domain description: Ribosomal protein L21e
Occurring in:
  1. Large ribosomal subunit protein eL21A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01157 (Ribosomal protein L21e) in Large ribosomal subunit protein eL21A. Showing 1 copy in chain DB [auth AT].

PF01775
Domain description: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Occurring in:
  1. 60S ribosomal protein L20
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01775 (Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A) in 60S ribosomal protein L20. Showing 1 copy in chain CB [auth AS].

PF01280
Domain description: Ribosomal protein L19e
Occurring in:
  1. Large ribosomal subunit protein eL19A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01280 (Ribosomal protein L19e) in Large ribosomal subunit protein eL19A. Showing 1 copy in chain BB [auth AR].

PF17135
Domain description: Ribosomal protein 60S L18 and 50S L18e
Occurring in:
  1. Large ribosomal subunit protein eL18A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF17135 (Ribosomal protein 60S L18 and 50S L18e) in Large ribosomal subunit protein eL18A. Showing 1 copy in chain AB [auth AQ].

PF00237
Domain description: Ribosomal protein L22p/L17e
Occurring in:
  1. Large ribosomal subunit protein uL22A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00237 (Ribosomal protein L22p/L17e) in Large ribosomal subunit protein uL22A. Showing 1 copy in chain ZA [auth AP].

PF00572
Domain description: Ribosomal protein L13
Occurring in:
  1. Large ribosomal subunit protein uL13A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00572 (Ribosomal protein L13) in Large ribosomal subunit protein uL13A. Showing 1 copy in chain YA [auth AO].

PF00827
Domain description: Ribosomal L15
Occurring in:
  1. Large ribosomal subunit protein eL15A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00827 (Ribosomal L15) in Large ribosomal subunit protein eL15A. Showing 1 copy in chain XA [auth AN].

PF01929
Domain description: Ribosomal protein L14
Occurring in:
  1. Large ribosomal subunit protein eL14A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01929 (Ribosomal protein L14) in Large ribosomal subunit protein eL14A. Showing 1 copy in chain WA [auth AM].

PF01294
Domain description: Ribosomal protein L13e
Occurring in:
  1. Large ribosomal subunit protein eL13A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01294 (Ribosomal protein L13e) in Large ribosomal subunit protein eL13A. Showing 1 copy in chain VA [auth AL].

PF00327
Domain description: Ribosomal protein L30p/L7e
Occurring in:
  1. Large ribosomal subunit protein uL30A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00327 (Ribosomal protein L30p/L7e) in Large ribosomal subunit protein uL30A. Showing 1 copy in chain QA [auth AF].

PF08079
Domain description: Ribosomal L30 N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL30A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF08079 (Ribosomal L30 N-terminal domain) in Large ribosomal subunit protein uL30A. Showing 1 copy in chain QA [auth AF].

PF01159
Domain description: Ribosomal protein L6e
Occurring in:
  1. Large ribosomal subunit protein eL6A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF01159 (Ribosomal protein L6e) in Large ribosomal subunit protein eL6A. Showing 1 copy in chain PA [auth AE].

PF00297
Domain description: Ribosomal protein L3
Occurring in:
  1. Large ribosomal subunit protein uL3
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00297 (Ribosomal protein L3) in Large ribosomal subunit protein uL3. Showing 1 copy in chain JA [auth AB].

PF03947
Domain description: Ribosomal Proteins L2, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL2A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF03947 (Ribosomal Proteins L2, C-terminal domain) in Large ribosomal subunit protein uL2A. Showing 1 copy in chain IA [auth AA].

PF00181
Domain description: Ribosomal Proteins L2, RNA binding domain
Occurring in:
  1. Large ribosomal subunit protein uL2A
The deposited structure of PDB entry 8evp contains 1 copy of Pfam domain PF00181 (Ribosomal Proteins L2, RNA binding domain) in Large ribosomal subunit protein uL2A. Showing 1 copy in chain IA [auth AA].

Rfam RNA families (Rfam)
RF02543
Domain description: Eukaryotic large subunit ribosomal RNA
Occurring in:
  1. 25S ribosomal RNA

RF00001
Domain description: 5S ribosomal RNA
Occurring in:
  1. 5s rRNA

RF00002
Domain description: 5.8S ribosomal RNA
Occurring in:
  1. 5.8 S rRNA

RF01960
Domain description: Eukaryotic small subunit ribosomal RNA
Occurring in:
  1. 18S Ribosomal RNA