Ligands and environments ‹ 8fc8 ‹ Protein Data Bank in Europe (PDBe)

2 bound ligands:

XQ3 1001(A) Environment details ›

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script 1 started

FileManager.getAtomSetCollectionFromFile(https://www.ebi.ac.uk/pdbe/entry-files/download/8fc8.cif)

FileManager opening 1 https://www.ebi.ac.uk/pdbe/entry-files/download/8fc8.cif

The Resolver thinks MMCif

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TITLE: TRPV4-Rho GTPase complex structures reveal mechanisms of gating and disease.

Setting space group name to HM:P 1

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

Time for openFile(*8fc8): 1882 ms

reading 39476 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Babel

39476 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

TITLE: TRPV4-Rho GTPase complex structures reveal mechanisms of gating and disease.

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L

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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 8

Contacts: 0

Standard Hbond calculation

1 hydrogen bonds

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script 3 started

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autobond = true

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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 13

Contacts: 0

Standard Hbond calculation

1 hydrogen bonds

Script completed

Jmol script terminated

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forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 15

Contacts: 0

Standard Hbond calculation

1 hydrogen bonds

Script completed

Jmol script terminated

script 5 started

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autobond = true

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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 11

Contacts: 0

Standard Hbond calculation

1 hydrogen bonds

Script completed

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script 6 started

antialiasDisplay = true

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chainCaseSensitive = true

measurementUnits = "angstroms"

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forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 19

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/jvxl/readers/IsoIntersectReader.js

Contacts: 1 with net volume 0.3764562894528673 A^3

Standard Hbond calculation

3 hydrogen bonds

Script completed

Jmol script terminated

script 7 started

antialiasDisplay = true

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chainCaseSensitive = true

measurementUnits = "angstroms"

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forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 19

Contacts: 1 with net volume 0.3779998434611777 A^3

Standard Hbond calculation

3 hydrogen bonds

Script completed

Jmol script terminated

script 8 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 19

Contacts: 1 with net volume 0.3769535637667501 A^3

Standard Hbond calculation

3 hydrogen bonds

Script completed

Jmol script terminated

script 9 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 19

Contacts: 1 with net volume 0.37732880894618737 A^3

Standard Hbond calculation

3 hydrogen bonds

Script completed

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XQ3 1001(B) Environment details ›

XQ3 1002(C) Environment details ›

XQ3 1001(D) Environment details ›

Y01 1002(B) Environment details ›

Y01 1001(C) Environment details ›

Y01 1003(C) Environment details ›

Y01 1002(D) Environment details ›

No modified residues

PDBe › 8fc8 › Ligands and Environments

2 bound ligands:

Quick links

8fc8 › Ligands and Environments