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8fl7 › 5MC

5-METHYLCYTIDINE-5'-MONOPHOSPHATE

Modified residue 5MC in PDB entry 8fl7, assembly 1, front view (not present).

Modified residue 5MC in PDB entry 8fl7, assembly 1, side view (not present).

Modified residue 5MC in PDB entry 8fl7, assembly 1, top view (not present).

Formula: C₁₀ H₁₆ N₃ O₈ P

Molecular weight: 337 Da

One-letter code: C

Charge: 0

IUPAC InChI: InChI=1S/C10H16N3O8P/c1-4-2-13(10(16)12-8(4)11)9-7(15)6(14)5(21-9)3-20-22(17,18)19/h2,5-7,9,14-15H,3H2,1H3,(H2,11,12,16)(H2,17,18,19)/t5-,6-,7-,9-/m1/s1

IUPAC InChI key: NJQONZSFUKNYOY-JXOAFFINSA-N

Molecule 3

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	Chains
	Rfam
	Ligand binding sites
	Interaction interfaces

Chains

Chain C (auth L3)

Chain C

Rfam

Residues mapped to Rfam domains

Ligand binding sites

Residues binding MAGNESIUM ION <br><span style="display:inline-block;width:100%;text-align:center;margin-top:5px;"><img src="https://www.ebi.ac.uk/pdbe/static/files/pdbechem_v2/MG_200.svg" /><span>

Interaction interfaces

Residues interacting with Large ribosomal subunit protein uL23 (P62750)

Residues interacting with Ribosome biogenesis protein NOP53 (Q9NZM5)

Residues interacting with Pescadillo homolog (O00541)

Residues interacting with Large ribosomal subunit protein eL8 (P62424)

Residues interacting with Large ribosomal subunit protein eL15 (P61313)

Residues interacting with Large ribosomal subunit protein uL29 (P42766)

Residues interacting with Large ribosomal subunit protein eL37 (P61927)

Residues interacting with Large ribosomal subunit protein uL15 (P46776)

Residues interacting with Large ribosomal subunit protein eL42 (P83881)

Residues interacting with Large ribosomal subunit protein eL13 (P26373)

Residues interacting with Large ribosomal subunit protein eL36 (Q9Y3U8)

Residues interacting with Large ribosomal subunit protein eL18 (Q07020)

Residues interacting with Large ribosomal subunit protein uL24 (P61254)

Residues interacting with Large ribosomal subunit protein uL4 (P36578)

Residues interacting with Large ribosomal subunit protein eL39 (P62891)

Residues interacting with GTP-binding protein 4 (Q9BZE4)

Residues interacting with Large ribosomal subunit protein uL22 (P18621)

Residues interacting with Large ribosomal subunit protein eL32 (P62910)

Residues interacting with Large ribosomal subunit protein eL33 (P18077)

Residues interacting with Large ribosomal subunit protein eL6 (Q02878)

Residues interacting with Large ribosomal subunit protein eL28 (P46779)

Residues interacting with Large ribosomal subunit protein uL30 (P18124)

Residues interacting with Large ribosomal subunit protein eL20 (Q02543)

Residues interacting with Large ribosomal subunit protein eL14 (P50914)

Residues interacting with Large ribosomal subunit protein uL6 (P32969)

Residues interacting with Large ribosomal subunit protein eL21 (P46778)

Residues interacting with Large ribosomal subunit protein uL18 (P46777)

Residues interacting with Large ribosomal subunit protein eL29 (P47914)

Residues interacting with Large ribosomal subunit protein uL13 (P40429)

Residues interacting with Large ribosomal subunit protein uL2 (P62917)

Residues interacting with Large ribosomal subunit protein eL34 (P49207)

Residues interacting with Large ribosomal subunit protein eL19 (P84098)

Residues interacting with Large ribosomal subunit protein eL43 (P61513)

Residues interacting with Zinc finger protein 593 (O00488)

Residues interacting with Large ribosomal subunit protein uL3 (P39023)

Residues interacting with Ribosome biogenesis protein NSA2 homolog (O95478)

Residues interacting with mRNA turnover protein 4 homolog (Q9UKD2)

Residues interacting with Large ribosomal subunit protein uL11 (P30050)

Residues interacting with Large ribosomal subunit protein eL31 (P62899)

Residues interacting with Ribosomal protein uL30-like (Q6DKI1)

Residues interacting with Large ribosomal subunit protein eL38 (P63173)

Residues interacting with Large ribosomal subunit protein eL27 (P61353)

Residues interacting with Large ribosomal subunit protein eL22 (P35268)

Residues interacting with Probable ribosome biogenesis protein RLP24 (Q9UHA3)

Residues interacting with Large ribosomal subunit protein eL30 (P62888)

Residues interacting with Large ribosomal subunit protein uL14 (P62829)

Residues interacting with Large ribosomal subunit protein uL5 (P62913)

Residues interacting with Protein LLP homolog (Q9BRT6)

Residues interacting with Eukaryotic translation initiation factor 6 (P56537)

Sequence conservation

Amino acid probabilities The amino acid probabilities are calculated using HMM profiles based on multiple sequence alignments. Click to see more details...

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Amino acid properties

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Cysteine

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Variants

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Topology Data Not Available!

8fl7:L3

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PDB › 8fl7 › 5MC

5-METHYLCYTIDINE-5'-MONOPHOSPHATE

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8fl7 › 5MC