8fwe

Electron Microscopy
3.46Å resolution

Neck structure of Agrobacterium phage Milano, C3 symmetry

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero 102-mer (preferred)
PDBe Complex ID:
PDB-CPX-236195 (preferred)
Entry contents:
6 distinct polypeptide molecules
Macromolecules (6 distinct):
Virion-associated protein Chains: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z
Molecule details ›
Chains: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z
Length: 230 amino acids
Theoretical weight: 24.49 KDa
Source organism: Agrobacterium phage Milano
UniProt:
  • Canonical: A0A482MGH3 (Residues: 57-286; Coverage: 80%)
Gene name: Milano_013
Sequence domains: Bacterial Ig domain
Portal protein Chains: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL
Molecule details ›
Chains: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL
Length: 420 amino acids
Theoretical weight: 45.84 KDa
Source organism: Agrobacterium phage Milano
UniProt:
  • Canonical: A0A482MFW7 (Residues: 1-420; Coverage: 100%)
Gene name: Milano_007
Sequence domains: Phage portal protein
Head completion protein Chains: AM, AN, AO, AP, H, I
Molecule details ›
Chains: AM, AN, AO, AP, H, I
Length: 141 amino acids
Theoretical weight: 16.05 KDa
Source organism: Agrobacterium phage Milano
UniProt:
  • Canonical: A0A482MFQ3 (Residues: 1-141; Coverage: 100%)
Gene name: Milano_015
Virion-associated protein Chains: AQ, AR, AS, AT, AW, AX
Molecule details ›
Chains: AQ, AR, AS, AT, AW, AX
Length: 178 amino acids
Theoretical weight: 20.27 KDa
Source organism: Agrobacterium phage Milano
UniProt:
  • Canonical: A0A482MF73 (Residues: 1-178; Coverage: 100%)
Gene name: Milano_018
Virion-associated protein Chains: AU, AV, AY, AZ, Aa, Ab
Molecule details ›
Chains: AU, AV, AY, AZ, Aa, Ab
Length: 136 amino acids
Theoretical weight: 14.67 KDa
Source organism: Agrobacterium phage Milano
UniProt:
  • Canonical: A0A482MHE7 (Residues: 1-136; Coverage: 100%)
Gene name: Milano_021
Head-to-tail connector complex protein Chains: R3, R4, R5, S3, S4, S5, T3, T4, T5, U3, U4, U5
Molecule details ›
Chains: R3, R4, R5, S3, S4, S5, T3, T4, T5, U3, U4, U5
Length: 202 amino acids
Theoretical weight: 22.26 KDa
Source organism: Agrobacterium phage Milano
UniProt:
  • Canonical: A0A482MHL8 (Residues: 1-202; Coverage: 100%)
Gene name: Milano_014

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.46Å
Relevant EMDB volumes: EMD-29503