8g72

Electron Microscopy
5.6Å resolution

SARS-CoV-2 spike/Nb2 complex with 1 RBD up (local refinement at 5.6 A)

Released:

Function and Biology Details

Biochemical function:
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-239115 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Nanosota-2 Chain: A
Molecule details ›
Chain: A
Length: 152 amino acids
Theoretical weight: 16.75 KDa
Source organism: Vicugna pacos
Expression system: Escherichia coli
Spike glycoprotein Chain: B
Molecule details ›
Chain: B
Length: 1234 amino acids
Theoretical weight: 136.89 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 14-1211; Coverage: 95%)
Gene names: 2, S
Sequence domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 5.6Å
Relevant EMDB volumes: EMD-29794
Expression systems:
  • Escherichia coli
  • Homo sapiens