› 8g7b

Electron Microscopy
3.2Å resolution

SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3 (local refinement)

Released:
DOI: 10.2210/pdb8g7b/pdb
PDB entry 8g7b coloured by chain, front view.
PDB entry 8g7b coloured by chain, side view.
PDB entry 8g7b coloured by chain, top view.
Source organisms:
Entry authors: Ye G, Bu F, Liu B, Li F
Related structures: EMD-29805

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-535565 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Nanosota-3 Chains: C, E
Molecule details ›
Chains: C, E
Length: 138 amino acids
Theoretical weight: 15.09 KDa
Source organism: Vicugna pacos
Expression system: Escherichia coli
Spike glycoprotein Chains: A, B, D
Molecule details ›
Chains: A, B, D
Length: 1234 amino acids
Theoretical weight: 136.83 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 14-1211; Coverage: 95%)
Gene names: 2, S
Sequence domains:

Ligands and Environments

1 bound ligand:
Ligand NAG 7 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.2Å
Relevant EMDB volumes: EMD-29805
Expression systems:
  • Escherichia coli
  • Homo sapiens

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