› 8gta

Electron Microscopy
3.63Å resolution

Cryo-EM structure of the marine siphophage vB_Dshs-R4C capsid

Released:
DOI: 10.2210/pdb8gta/pdb
PDB entry 8gta coloured by chain, front view.
PDB entry 8gta coloured by chain, side view.
PDB entry 8gta coloured by chain, top view.
Source organism: Dinoroseobacter phage vB_DshS-R4C
Primary publication:
Structure and proposed DNA delivery mechanism of a marine roseophage.
Huang Y, Sun H, Wei S, Cai L, Liu L, Jiang Y, Xin J, Chen Z, Que Y, Kong Z, Li T, Yu H, Zhang J, Gu Y, Zheng Q, Li S, Zhang R, Xia N
Nat Commun 14 3609 (2023)
PMID: 37330604
Related structures: EMD-34247

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo 420-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-221050 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Major capsid protein Chains: A, B, C, D, E, F, G
Molecule details ›
Chains: A, B, C, D, E, F, G
Length: 268 amino acids
Theoretical weight: 28.28 KDa
Source organism: Dinoroseobacter phage vB_DshS-R4C
UniProt:
  • Canonical: A0A4Y6E923 (Residues: 362-629; Coverage: 43%)
Gene name: vBDshSR4C_006
Sequence domains: Phage capsid family

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.63Å
Relevant EMDB volumes: EMD-34247

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