› 8h6f

Electron Microscopy
3.3Å resolution

Cryo-EM structure of SARS-CoV-2 Spike protein in complex with A6 repebody

Released:
DOI: 10.2210/pdb8h6f/pdb
PDB entry 8h6f coloured by chain, front view.
PDB entry 8h6f coloured by chain, side view.
PDB entry 8h6f coloured by chain, top view.
Source organisms:
Entry authors: Kim UJ, Yoo Y, Cho HS
Related structures: EMD-34501

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-232826 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
Spike glycoprotein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 1208 amino acids
Theoretical weight: 133.78 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P0DTC2 (Residues: 1-1208; Coverage: 95%)
Gene names: 2, S
Sequence domains:
Repebody (A6) Chains: X, Y, Z
Molecule details ›
Chains: X, Y, Z
Length: 267 amino acids
Theoretical weight: 30.18 KDa
Source organism: Cyclostomatida
Expression system: Spodoptera frugiperda

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
1 bound ligand:
Ligand NAG 24 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.3Å
Relevant EMDB volumes: EMD-34501
Expression system: Spodoptera frugiperda

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