8hed

Electron Microscopy
3.59Å resolution

Local refinement of the SARS-CoV-2 Spike trimer in complex with RmAb 9H1 Fab

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-272924 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (4 distinct):
Spike protein S1 Chain: B
Molecule details ›
Chain: B
Length: 200 amino acids
Theoretical weight: 22.45 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 331-530; Coverage: 16%)
Gene names: 2, S
Sequence domains: Betacoronavirus spike glycoprotein S1, receptor binding
rabbit antibody 9H1 light chain Chain: F
Molecule details ›
Chain: F
Length: 110 amino acids
Theoretical weight: 11.65 KDa
Source organism: Oryctolagus cuniculus
Expression system: Homo sapiens
rabbit antibody 9H1 heavy chain Chain: G
Molecule details ›
Chain: G
Length: 117 amino acids
Theoretical weight: 12.56 KDa
Source organism: Oryctolagus cuniculus
Expression system: Homo sapiens

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.59Å
Relevant EMDB volumes: EMD-34688
Expression system: Homo sapiens