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Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Source organism: Sulfolobus acidocaldarius DSM 639
Biochemical function: structural constituent of ribosome
Biological process: translation
Cellular component: ribosome

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GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF01248
Domain description: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Occurring in:
  1. Large ribosomal subunit protein eL30
  2. Large ribosomal subunit protein eL8
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in Large ribosomal subunit protein eL30. Showing 1 copy in chain W [auth L30E].
The deposited structure of PDB entry 8hkv contains 2 copies of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in Large ribosomal subunit protein eL8. Showing 1 copy in chain GA [auth L7A1].

PF00467
Domain description: KOW motif
Occurring in:
  1. Large ribosomal subunit protein eL14
  2. Large ribosomal subunit protein uL24
The deposited structure of PDB entry 8hkv contains 2 copies of Pfam domain PF00467 (KOW motif) in Large ribosomal subunit protein eL14. Showing 1 copy in chain K [auth L141].
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00467 (KOW motif) in Large ribosomal subunit protein uL24. Showing 1 copy in chain U [auth L24P].

PF00347
Domain description: Ribosomal protein L6
Occurring in:
  1. Large ribosomal subunit protein uL6
The deposited structure of PDB entry 8hkv contains 2 copies of Pfam domain PF00347 (Ribosomal protein L6) in Large ribosomal subunit protein uL6. Showing 2 copies in chain G [auth AL6P].

PF18533
Domain description: Domain of unknown function (DUF5622)
Occurring in:
  1. DUF5622 domain-containing protein
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF18533 (Domain of unknown function (DUF5622)) in DUF5622 domain-containing protein. Showing 1 copy in chain LA [auth L46A].

PF00935
Domain description: Ribosomal protein L44
Occurring in:
  1. Large ribosomal subunit protein eL42
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00935 (Ribosomal protein L44) in Large ribosomal subunit protein eL42. Showing 1 copy in chain FA [auth L44E].

PF01020
Domain description: Ribosomal L40e family
Occurring in:
  1. 50S ribosomal protein L40e
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF01020 (Ribosomal L40e family) in 50S ribosomal protein L40e. Showing 1 copy in chain EA [auth L40E].

PF00832
Domain description: Ribosomal L39 protein
Occurring in:
  1. Large ribosomal subunit protein eL39
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00832 (Ribosomal L39 protein) in Large ribosomal subunit protein eL39. Showing 1 copy in chain DA [auth L39E].

PF01907
Domain description: Ribosomal protein L37e
Occurring in:
  1. Large ribosomal subunit protein eL37
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF01907 (Ribosomal protein L37e) in Large ribosomal subunit protein eL37. Showing 1 copy in chain CA [auth L37E].

PF01780
Domain description: Ribosomal L37ae protein family
Occurring in:
  1. Large ribosomal subunit protein eL43
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF01780 (Ribosomal L37ae protein family) in Large ribosomal subunit protein eL43. Showing 1 copy in chain BA [auth L37A].

PF01199
Domain description: Ribosomal protein L34e
Occurring in:
  1. Large ribosomal subunit protein eL34
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF01199 (Ribosomal protein L34e) in Large ribosomal subunit protein eL34. Showing 1 copy in chain AA [auth L34E].

PF01655
Domain description: Ribosomal protein L32
Occurring in:
  1. Large ribosomal subunit protein eL32
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF01655 (Ribosomal protein L32) in Large ribosomal subunit protein eL32. Showing 1 copy in chain Z [auth L32E].

PF01198
Domain description: Ribosomal protein L31e
Occurring in:
  1. Large ribosomal subunit protein eL31
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF01198 (Ribosomal protein L31e) in Large ribosomal subunit protein eL31. Showing 1 copy in chain Y [auth L31E].

PF00327
Domain description: Ribosomal protein L30p/L7e
Occurring in:
  1. Large ribosomal subunit protein uL30
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00327 (Ribosomal protein L30p/L7e) in Large ribosomal subunit protein uL30. Showing 1 copy in chain X [auth L30P].

PF00831
Domain description: Ribosomal L29 protein
Occurring in:
  1. Large ribosomal subunit protein uL29
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00831 (Ribosomal L29 protein) in Large ribosomal subunit protein uL29. Showing 1 copy in chain V [auth L29P].

PF16906
Domain description: Ribosomal proteins L26 eukaryotic, L24P archaeal
Occurring in:
  1. Large ribosomal subunit protein uL24
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF16906 (Ribosomal proteins L26 eukaryotic, L24P archaeal) in Large ribosomal subunit protein uL24. Showing 1 copy in chain U [auth L24P].

PF01246
Domain description: Ribosomal protein L24e
Occurring in:
  1. Large ribosomal subunit protein eL24
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF01246 (Ribosomal protein L24e) in Large ribosomal subunit protein eL24. Showing 1 copy in chain T [auth L24E].

PF00276
Domain description: Ribosomal protein L23
Occurring in:
  1. Large ribosomal subunit protein uL23
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00276 (Ribosomal protein L23) in Large ribosomal subunit protein uL23. Showing 1 copy in chain S [auth L23P].

PF00237
Domain description: Ribosomal protein L22p/L17e
Occurring in:
  1. Large ribosomal subunit protein uL22
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00237 (Ribosomal protein L22p/L17e) in Large ribosomal subunit protein uL22. Showing 1 copy in chain R [auth L22P].

PF01157
Domain description: Ribosomal protein L21e
Occurring in:
  1. Large ribosomal subunit protein eL21
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF01157 (Ribosomal protein L21e) in Large ribosomal subunit protein eL21. Showing 1 copy in chain JA [auth L21E].

PF01280
Domain description: Ribosomal protein L19e
Occurring in:
  1. Large ribosomal subunit protein eL19
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF01280 (Ribosomal protein L19e) in Large ribosomal subunit protein eL19. Showing 1 copy in chain Q [auth L19E].

PF17144
Domain description: Ribosomal large subunit proteins 60S L5, and 50S L18
Occurring in:
  1. Large ribosomal subunit protein uL18
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF17144 (Ribosomal large subunit proteins 60S L5, and 50S L18) in Large ribosomal subunit protein uL18. Showing 1 copy in chain P [auth L18P].

PF17135
Domain description: Ribosomal protein 60S L18 and 50S L18e
Occurring in:
  1. Large ribosomal subunit protein eL18
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF17135 (Ribosomal protein 60S L18 and 50S L18e) in Large ribosomal subunit protein eL18. Showing 1 copy in chain O [auth L18E].

PF00828
Domain description: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Occurring in:
  1. Large ribosomal subunit protein uL15
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00828 (Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A) in Large ribosomal subunit protein uL15. Showing 1 copy in chain IA [auth L15P].

PF00827
Domain description: Ribosomal L15
Occurring in:
  1. Large ribosomal subunit protein eL15
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00827 (Ribosomal L15) in Large ribosomal subunit protein eL15. Showing 1 copy in chain N [auth L15E].

PF00238
Domain description: Ribosomal protein L14p/L23e
Occurring in:
  1. Large ribosomal subunit protein uL14
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00238 (Ribosomal protein L14p/L23e) in Large ribosomal subunit protein uL14. Showing 1 copy in chain M [auth L14P].

PF00572
Domain description: Ribosomal protein L13
Occurring in:
  1. Large ribosomal subunit protein uL13
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00572 (Ribosomal protein L13) in Large ribosomal subunit protein uL13. Showing 1 copy in chain J [auth L13P].

PF00252
Domain description: Ribosomal protein L16p/L10e
Occurring in:
  1. Large ribosomal subunit protein uL16
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00252 (Ribosomal protein L16p/L10e) in Large ribosomal subunit protein uL16. Showing 1 copy in chain I [auth L10E].

PF01775
Domain description: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Occurring in:
  1. Large ribosomal subunit protein eL20
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF01775 (Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A) in Large ribosomal subunit protein eL20. Showing 1 copy in chain H [auth ALX0].

PF00673
Domain description: ribosomal L5P family C-terminus
Occurring in:
  1. Large ribosomal subunit protein uL5
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00673 (ribosomal L5P family C-terminus) in Large ribosomal subunit protein uL5. Showing 1 copy in chain F [auth AL5P].

PF00281
Domain description: Ribosomal protein L5
Occurring in:
  1. Large ribosomal subunit protein uL5
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00281 (Ribosomal protein L5) in Large ribosomal subunit protein uL5. Showing 1 copy in chain F [auth AL5P].

PF00573
Domain description: Ribosomal protein L4/L1 family
Occurring in:
  1. Large ribosomal subunit protein uL4
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00573 (Ribosomal protein L4/L1 family) in Large ribosomal subunit protein uL4. Showing 1 copy in chain E [auth AL4P].

PF00297
Domain description: Ribosomal protein L3
Occurring in:
  1. Large ribosomal subunit protein uL3
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00297 (Ribosomal protein L3) in Large ribosomal subunit protein uL3. Showing 1 copy in chain D [auth AL3P].

PF03947
Domain description: Ribosomal Proteins L2, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL2
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF03947 (Ribosomal Proteins L2, C-terminal domain) in Large ribosomal subunit protein uL2. Showing 1 copy in chain C [auth AL2P].

PF00181
Domain description: Ribosomal Proteins L2, RNA binding domain
Occurring in:
  1. Large ribosomal subunit protein uL2
The deposited structure of PDB entry 8hkv contains 1 copy of Pfam domain PF00181 (Ribosomal Proteins L2, RNA binding domain) in Large ribosomal subunit protein uL2. Showing 1 copy in chain C [auth AL2P].

Rfam RNA families (Rfam)
RF02540
Domain description: Archaeal large subunit ribosomal RNA
Occurring in:
  1. 23s rRNA (2996-MER)
The deposited structure of PDB entry 8hkv contains 1 copy of Rfam domain RF02540 (Archaeal large subunit ribosomal RNA) in 23s rRNA (2996-MER). Showing 1 copy in chain A [auth A23S].

RF00001
Domain description: 5S ribosomal RNA
Occurring in:
  1. 5s rRNA (122-MER)
The deposited structure of PDB entry 8hkv contains 1 copy of Rfam domain RF00001 (5S ribosomal RNA) in 5s rRNA (122-MER). Showing 1 copy in chain B [auth A5S].

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