› 8i29

X-ray diffraction
2.72Å resolution

Crystal structure of butanol dehydrogenase A (YqdH) in complex with NADH from Fusobacterium nucleatum

Released:
DOI: 10.2210/pdb8i29/pdb
PDB entry 8i29 coloured by chain, front view.
PDB entry 8i29 coloured by chain, side view.
PDB entry 8i29 coloured by chain, top view.
Source organism: Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Entry authors: Bai X, Lan J, Bu TT, Wang LL, He SR, Zhang J, Xu YB

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-569903 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Alcohol dehydrogenase iron-type/glycerol dehydrogenase GldA domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 385 amino acids
Theoretical weight: 43.34 KDa
Source organism: Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Expression system: Escherichia coli K-12
UniProt:
  • Canonical: Q8R612 (Residues: 1-385; Coverage: 100%)
Gene name: FN1415
Sequence domains: Iron-containing alcohol dehydrogenase

Ligands and Environments

4 bound ligands:
Ligand CO 1 x CO
Ligand NAD 1 x NAD
Ligand CL 1 x CL
Ligand PO4 1 x PO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17B1
Spacegroup: I222
Unit cell:
a: 64.426Å b: 79.351Å c: 212.932Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.204 0.197 0.258
Expression system: Escherichia coli K-12

Quick links