› 8i8b

Electron Microscopy
4.31Å resolution

Outer shell and inner layer structures of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)

Released:
DOI: 10.2210/pdb8i8b/pdb
PDB entry 8i8b coloured by chain, front view.
PDB entry 8i8b coloured by chain, side view.
PDB entry 8i8b coloured by chain, top view.
Source organism: Autographa californica multiple nucleopolyhedrovirus
Primary publication:
Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Jia X, Gao Y, Huang Y, Sun L, Li S, Li H, Zhang X, Li Y, He J, Wu W, Venkannagari H, Yang K, Baker ML, Zhang Q
OpenAccess logo Nat Commun 14 7481 (2023)
PMID: 37980340
Related structures: EMD-35246

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero tetradecamer (preferred)
PDBe Complex ID:
PDB-CPX-242301 (preferred)
Entry contents:
7 distinct polypeptide molecules
Macromolecules (7 distinct):
Major capsid protein Chains: W, X, Y, Z
Molecule details ›
Chains: W, X, Y, Z
Length: 347 amino acids
Theoretical weight: 38.99 KDa
Source organism: Autographa californica multiple nucleopolyhedrovirus
UniProt:
  • Canonical: P17499 (Residues: 1-347; Coverage: 100%)
Gene names: ORF89, P39, VP39
Sequence domains: Baculovirus major capsid protein VP39
Capsid-associated protein VP80 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 691 amino acids
Theoretical weight: 79.97 KDa
Source organism: Autographa californica multiple nucleopolyhedrovirus
UniProt:
  • Canonical: Q00733 (Residues: 1-691; Coverage: 100%)
Gene names: ORF104, VP80
Sequence domains: Nucleopolyhedrovirus capsid protein P87
Protein AC109 Chain: D
Molecule details ›
Chain: D
Length: 390 amino acids
Theoretical weight: 44.85 KDa
Source organism: Autographa californica multiple nucleopolyhedrovirus
UniProt:
  • Canonical: P41662 (Residues: 1-390; Coverage: 100%)
Gene name: ORF109
Sequence domains: Autographa californica nuclear polyhedrosis virus (AcMNPV) protein
Protein AC142 Chain: E
Molecule details ›
Chain: E
Length: 477 amino acids
Theoretical weight: 55.48 KDa
Source organism: Autographa californica multiple nucleopolyhedrovirus
UniProt:
  • Canonical: P41700 (Residues: 1-477; Coverage: 100%)
Gene name: ORF142
Sequence domains: Baculovirus Y142 protein
Protein C42 Chains: F, G
Molecule details ›
Chains: F, G
Length: 361 amino acids
Theoretical weight: 41.58 KDa
Source organism: Autographa californica multiple nucleopolyhedrovirus
UniProt:
  • Canonical: P25695 (Residues: 1-361; Coverage: 100%)
Gene name: ORF101
Sequence domains: Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf101
Occlusion-derived virus envelope protein E27 Chains: H, I
Molecule details ›
Chains: H, I
Length: 290 amino acids
Theoretical weight: 33.57 KDa
Source organism: Autographa californica multiple nucleopolyhedrovirus
UniProt:
  • Canonical: P41702 (Residues: 1-290; Coverage: 100%)
Gene names: E27, ORF144
Sequence domains: Baculovirus occlusion-derived virus envelope protein EC27
Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region Chain: J
Molecule details ›
Chain: J
Length: 320 amino acids
Theoretical weight: 38.07 KDa
Source organism: Autographa californica multiple nucleopolyhedrovirus
UniProt:
  • Canonical: P24745 (Residues: 1-320; Coverage: 100%)
Sequence domains: Protein of unknown function (DUF705)

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.31Å
Relevant EMDB volumes: EMD-35246

Quick links