› 8if6

Electron Microscopy
7.09Å resolution

Conformational Dynamics of the D53-D3-D14 Complex in Strigolactone Signaling

Released:
DOI: 10.2210/pdb8if6/pdb
PDB entry 8if6 coloured by chain, front view.
PDB entry 8if6 coloured by chain, side view.
PDB entry 8if6 coloured by chain, top view.
Source organism: Oryza sativa Japonica Group
Primary publication:
Conformational Dynamics of the D53-D3-D14 Complex in Strigolactone Signaling.
Liu S, Wang J, Song B, Gong X, Liu H, Hu Q, Zhang J, Li Q, Zheng J, Wang H, Xu HE, Li J, Wang B
Plant Cell Physiol (2023)
PMID: 37384578
Related structures: EMD-35402

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-221468 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
F-box/LRR-repeat MAX2 homolog Chain: A
Molecule details ›
Chain: A
Length: 720 amino acids
Theoretical weight: 79.31 KDa
Source organism: Oryza sativa Japonica Group
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q5VMP0 (Residues: 1-720; Coverage: 100%)
Gene names: D3, LOC_Os06g06050, OSJNBa0085L11.6-1, Os06g0154200
Sequence domains: F-box-like
Strigolactone esterase D14 Chain: C
Molecule details ›
Chain: C
Length: 318 amino acids
Theoretical weight: 33.55 KDa
Source organism: Oryza sativa Japonica Group
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q10QA5 (Residues: 1-318; Coverage: 100%)
Gene names: D14, D88, HTD2, LOC_Os03g10620, Os03g0203200
Sequence domains: Alpha/beta hydrolase family
SKP1-like protein 20 Chain: B
Molecule details ›
Chain: B
Length: 175 amino acids
Theoretical weight: 19.22 KDa
Source organism: Oryza sativa Japonica Group
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q651E8 (Residues: 1-175; Coverage: 100%)
Gene names: B1274F11.9, LOC_Os09g36830, OSK20, Os09g0539500, OsJ_30167, SKP20
Sequence domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 7.09Å
Relevant EMDB volumes: EMD-35402
Expression system: Spodoptera frugiperda

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