8iuf

Electron Microscopy
2.81Å resolution

Cryo-EM structure of Euglena gracilis super-complex I+III2+IV, composite

Released:
Source organism: Euglena gracilis
Related structures: EMD-35720

Function and Biology Details

Reactions catalysed:
4 ferrocytochrome c + O(2) + 8 H(+)(Side 1) = 4 ferricytochrome c + 4 H(2)O(Side 2)
NADH + ubiquinone + 5 H(+)(Side 1) = NAD(+) + ubiquinol + 4 H(+)(Side 2)
Quinol + 2 ferricytochrome c(Side 2) = quinone + 2 ferrocytochrome c(Side 2) + 2 H(+)(Side 2)
Biochemical function:
Cellular component:

Structure analysis Details

Assembly composition:
hetero 103-mer (preferred)
PDBe Complex ID:
PDB-CPX-240371 (preferred)
Entry contents:
90 distinct polypeptide molecules
Macromolecules (90 distinct):
NDUFS1a Chain: 1A
Molecule details ›
Chain: 1A
Length: 385 amino acids
Theoretical weight: 43.89 KDa
Source organism: Euglena gracilis
NDUFS1b Chain: 1B
Molecule details ›
Chain: 1B
Length: 527 amino acids
Theoretical weight: 59.67 KDa
Source organism: Euglena gracilis
ND2b Chain: 2B
Molecule details ›
Chain: 2B
Length: 142 amino acids
Theoretical weight: 15.76 KDa
Source organism: Euglena gracilis
COXEG1 Chain: 4A
Molecule details ›
Chain: 4A
Length: 246 amino acids
Theoretical weight: 27.28 KDa
Source organism: Euglena gracilis
COXEG3 Chain: 4C
Molecule details ›
Chain: 4C
Length: 139 amino acids
Theoretical weight: 16.39 KDa
Source organism: Euglena gracilis
COXEG4 Chain: 4D
Molecule details ›
Chain: 4D
Length: 174 amino acids
Theoretical weight: 19.36 KDa
Source organism: Euglena gracilis
COXEG5 Chain: 4E
Molecule details ›
Chain: 4E
Length: 165 amino acids
Theoretical weight: 19.46 KDa
Source organism: Euglena gracilis
COXEG6 Chain: 4F
Molecule details ›
Chain: 4F
Length: 75 amino acids
Theoretical weight: 8.73 KDa
Source organism: Euglena gracilis
COXEG7 Chain: 4G
Molecule details ›
Chain: 4G
Length: 315 amino acids
Theoretical weight: 35.65 KDa
Source organism: Euglena gracilis
COXEG8 Chain: 4H
Molecule details ›
Chain: 4H
Length: 221 amino acids
Theoretical weight: 24.5 KDa
Source organism: Euglena gracilis
COXEG9 Chain: 4I
Molecule details ›
Chain: 4I
Length: 274 amino acids
Theoretical weight: 31.75 KDa
Source organism: Euglena gracilis
COXEG10 Chain: 4J
Molecule details ›
Chain: 4J
Length: 88 amino acids
Theoretical weight: 10.04 KDa
Source organism: Euglena gracilis
ND4L Chain: 4L
Molecule details ›
Chain: 4L
Length: 171 amino acids
Theoretical weight: 19.67 KDa
Source organism: Euglena gracilis
COX5b-2 Chain: 5B
Molecule details ›
Chain: 5B
Length: 174 amino acids
Theoretical weight: 19.74 KDa
Source organism: Euglena gracilis
COX5c Chain: 5C
Molecule details ›
Chain: 5C
Length: 208 amino acids
Theoretical weight: 23.79 KDa
Source organism: Euglena gracilis
COX6a Chain: 6A
Molecule details ›
Chain: 6A
Length: 112 amino acids
Theoretical weight: 13.08 KDa
Source organism: Euglena gracilis
COX6b-1 Chain: 6B
Molecule details ›
Chain: 6B
Length: 287 amino acids
Theoretical weight: 33 KDa
Source organism: Euglena gracilis
COX7a Chain: 7A
Molecule details ›
Chain: 7A
Length: 178 amino acids
Theoretical weight: 20.08 KDa
Source organism: Euglena gracilis
COX7c Chain: 7C
Molecule details ›
Chain: 7C
Length: 171 amino acids
Theoretical weight: 19.9 KDa
Source organism: Euglena gracilis
NDUFA1 Chain: A1
Molecule details ›
Chain: A1
Length: 141 amino acids
Theoretical weight: 15.66 KDa
Source organism: Euglena gracilis
NDUFA2 Chain: A2
Molecule details ›
Chain: A2
Length: 193 amino acids
Theoretical weight: 21.33 KDa
Source organism: Euglena gracilis
NDUFA3 Chain: A3
Molecule details ›
Chain: A3
Length: 125 amino acids
Theoretical weight: 14.95 KDa
Source organism: Euglena gracilis
NDUFA5 Chain: A5
Molecule details ›
Chain: A5
Length: 184 amino acids
Theoretical weight: 20.96 KDa
Source organism: Euglena gracilis
NDUFA6 Chain: A6
Molecule details ›
Chain: A6
Length: 437 amino acids
Theoretical weight: 48.79 KDa
Source organism: Euglena gracilis
NDUFA7 Chain: A7
Molecule details ›
Chain: A7
Length: 136 amino acids
Theoretical weight: 16.36 KDa
Source organism: Euglena gracilis
NDUFA8 Chain: A8
Molecule details ›
Chain: A8
Length: 223 amino acids
Theoretical weight: 25.92 KDa
Source organism: Euglena gracilis
NDUFA9 Chain: A9
Molecule details ›
Chain: A9
Length: 489 amino acids
Theoretical weight: 54.98 KDa
Source organism: Euglena gracilis
NDUFAB1-alpha Chain: AB
Molecule details ›
Chain: AB
Length: 134 amino acids
Theoretical weight: 14.94 KDa
Source organism: Euglena gracilis
NDUFAB1-beta Chain: AC
Molecule details ›
Chain: AC
Length: 134 amino acids
Theoretical weight: 14.9 KDa
Source organism: Euglena gracilis
NDUFA12 Chain: AL
Molecule details ›
Chain: AL
Length: 281 amino acids
Theoretical weight: 33.34 KDa
Source organism: Euglena gracilis
NDUFA13 Chain: AM
Molecule details ›
Chain: AM
Length: 198 amino acids
Theoretical weight: 22.68 KDa
Source organism: Euglena gracilis
NDUFA11 Chain: AN
Molecule details ›
Chain: AN
Length: 287 amino acids
Theoretical weight: 32.62 KDa
Source organism: Euglena gracilis
NDUFB2 Chain: B2
Molecule details ›
Chain: B2
Length: 145 amino acids
Theoretical weight: 17.2 KDa
Source organism: Euglena gracilis
NDUFB3 Chain: B3
Molecule details ›
Chain: B3
Length: 62 amino acids
Theoretical weight: 6.83 KDa
Source organism: Euglena gracilis
NDUFB4 Chain: B4
Molecule details ›
Chain: B4
Length: 171 amino acids
Theoretical weight: 19.51 KDa
Source organism: Euglena gracilis
NDUFB5 Chain: B5
Molecule details ›
Chain: B5
Length: 140 amino acids
Theoretical weight: 15.82 KDa
Source organism: Euglena gracilis
NDUFB6 Chain: B6
Molecule details ›
Chain: B6
Length: 91 amino acids
Theoretical weight: 10.93 KDa
Source organism: Euglena gracilis
NDUFB7 Chain: B7
Molecule details ›
Chain: B7
Length: 97 amino acids
Theoretical weight: 12.25 KDa
Source organism: Euglena gracilis
NDUFB8 Chain: B8
Molecule details ›
Chain: B8
Length: 176 amino acids
Theoretical weight: 20.49 KDa
Source organism: Euglena gracilis
NDUFB9 Chain: B9
Molecule details ›
Chain: B9
Length: 158 amino acids
Theoretical weight: 18.35 KDa
Source organism: Euglena gracilis
NDUFB10 Chain: BL
Molecule details ›
Chain: BL
Length: 144 amino acids
Theoretical weight: 17.47 KDa
Source organism: Euglena gracilis
NDUFB11 Chain: BM
Molecule details ›
Chain: BM
Length: 112 amino acids
Theoretical weight: 13.05 KDa
Source organism: Euglena gracilis
Cytochrome c oxidase subunit 1 Chain: C1
Molecule details ›
Chain: C1
Length: 495 amino acids
Theoretical weight: 55.76 KDa
Source organism: Euglena gracilis
UniProt:
  • Canonical: Q34463 (Residues: 1-495; Coverage: 100%)
Gene names: CoI, cox1
Sequence domains: Cytochrome C and Quinol oxidase polypeptide I
Cytochrome c oxidase subunit 2 Chain: C2
Molecule details ›
Chain: C2
Length: 196 amino acids
Theoretical weight: 22.44 KDa
Source organism: Euglena gracilis
UniProt:
  • Canonical: Q9XN19 (Residues: 1-196; Coverage: 100%)
Gene name: COXII
Sequence domains:
Putative NADH dehydrogenase subunit 6 Chain: C3
Molecule details ›
Chain: C3
Length: 161 amino acids
Theoretical weight: 19.41 KDa
Source organism: Euglena gracilis
UniProt:
  • Canonical: Q9XN18 (Residues: 1-161; Coverage: 100%)
Gene name: ND6
NDUFC2 Chain: C4
Molecule details ›
Chain: C4
Length: 185 amino acids
Theoretical weight: 22.01 KDa
Source organism: Euglena gracilis
COX4 Chain: DC
Molecule details ›
Chain: DC
Length: 179 amino acids
Theoretical weight: 20.43 KDa
Source organism: Euglena gracilis
NDUEG1 Chain: E1
Molecule details ›
Chain: E1
Length: 483 amino acids
Theoretical weight: 53.35 KDa
Source organism: Euglena gracilis
NDUEG2 Chain: E2
Molecule details ›
Chain: E2
Length: 472 amino acids
Theoretical weight: 51.02 KDa
Source organism: Euglena gracilis
NDUEG3 Chain: E3
Molecule details ›
Chain: E3
Length: 594 amino acids
Theoretical weight: 63.1 KDa
Source organism: Euglena gracilis
NDUEG4 Chain: E4
Molecule details ›
Chain: E4
Length: 368 amino acids
Theoretical weight: 41.31 KDa
Source organism: Euglena gracilis
NDUEG5 Chain: E5
Molecule details ›
Chain: E5
Length: 290 amino acids
Theoretical weight: 29.18 KDa
Source organism: Euglena gracilis
NDUEG6 Chain: E6
Molecule details ›
Chain: E6
Length: 371 amino acids
Theoretical weight: 43.67 KDa
Source organism: Euglena gracilis
NDUEG7 Chain: E7
Molecule details ›
Chain: E7
Length: 246 amino acids
Theoretical weight: 26.82 KDa
Source organism: Euglena gracilis
NDUEG8 Chain: E8
Molecule details ›
Chain: E8
Length: 205 amino acids
Theoretical weight: 23.99 KDa
Source organism: Euglena gracilis
NDUEG9 Chain: E9
Molecule details ›
Chain: E9
Length: 178 amino acids
Theoretical weight: 18.27 KDa
Source organism: Euglena gracilis
NDUEG10 Chain: EA
Molecule details ›
Chain: EA
Length: 126 amino acids
Theoretical weight: 14.14 KDa
Source organism: Euglena gracilis
NDUEG11 Chain: EB
Molecule details ›
Chain: EB
Length: 101 amino acids
Theoretical weight: 11.47 KDa
Source organism: Euglena gracilis
NDUEG11 Chain: EC
Molecule details ›
Chain: EC
Length: 101 amino acids
Theoretical weight: 11.32 KDa
Source organism: Euglena gracilis
NDUEG13 Chain: ED
Molecule details ›
Chain: ED
Length: 151 amino acids
Theoretical weight: 17.73 KDa
Source organism: Euglena gracilis
NDUFX Chain: FX
Molecule details ›
Chain: FX
Length: 325 amino acids
Theoretical weight: 37.2 KDa
Source organism: Euglena gracilis
NDUCA1 Chain: G1
Molecule details ›
Chain: G1
Length: 436 amino acids
Theoretical weight: 48.73 KDa
Source organism: Euglena gracilis
NDUCA2 Chain: G2
Molecule details ›
Chain: G2
Length: 267 amino acids
Theoretical weight: 28.86 KDa
Source organism: Euglena gracilis
NDUCA3 Chain: G3
Molecule details ›
Chain: G3
Length: 261 amino acids
Theoretical weight: 28.02 KDa
Source organism: Euglena gracilis
ND1 Chain: N1
Molecule details ›
Chain: N1
Length: 670 amino acids
Theoretical weight: 79.68 KDa
Source organism: Euglena gracilis
ND2a Chain: N2
Molecule details ›
Chain: N2
Length: 300 amino acids
Theoretical weight: 35.86 KDa
Source organism: Euglena gracilis
ND3 Chains: N3, N6
Molecule details ›
Chains: N3, N6
Length: 293 amino acids
Theoretical weight: 34.5 KDa
Source organism: Euglena gracilis
NADH-ubiquinone oxidoreductase chain 4 Chain: N4
Molecule details ›
Chain: N4
Length: 478 amino acids
Theoretical weight: 56.42 KDa
Source organism: Euglena gracilis
UniProt:
  • Canonical: A0A0S2YRV6 (Residues: 1-478; Coverage: 100%)
Gene name: nad4
Sequence domains: Proton-conducting membrane transporter
ND5 Chain: N5
Molecule details ›
Chain: N5
Length: 584 amino acids
Theoretical weight: 68.38 KDa
Source organism: Euglena gracilis
MPP-beta Chains: QA, Qa
Molecule details ›
Chains: QA, Qa
Length: 479 amino acids
Theoretical weight: 53.52 KDa
Source organism: Euglena gracilis
Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial Chains: QB, Qb
Molecule details ›
Chains: QB, Qb
Length: 474 amino acids
Theoretical weight: 51.13 KDa
Source organism: Euglena gracilis
UniProt:
  • Canonical: P43265 (Residues: 1-474; Coverage: 100%)
Sequence domains: Insulinase (Peptidase family M16)
Cytochrome b Chains: QC, Qc
Molecule details ›
Chains: QC, Qc
Length: 368 amino acids
Theoretical weight: 42.48 KDa
Source organism: Euglena gracilis
UniProt:
  • Canonical: A0A0S2YRT7 (Residues: 13-380; Coverage: 97%)
Gene name: cob
Sequence domains:
Cytochrome c1, heme protein Chains: QD, Qd
Molecule details ›
Chains: QD, Qd
Length: 243 amino acids
Theoretical weight: 27.89 KDa
Source organism: Euglena gracilis
UniProt:
  • Canonical: P20114 (Residues: 1-243; Coverage: 100%)
Sequence domains: Cytochrome C1 family
UQCRFS1 Chains: QE, Qe
Molecule details ›
Chains: QE, Qe
Length: 252 amino acids
Theoretical weight: 27.83 KDa
Source organism: Euglena gracilis
UQCRH Chains: QF, Qf
Molecule details ›
Chains: QF, Qf
Length: 72 amino acids
Theoretical weight: 8.21 KDa
Source organism: Euglena gracilis
UQCRB Chains: QG, Qg
Molecule details ›
Chains: QG, Qg
Length: 228 amino acids
Theoretical weight: 27.4 KDa
Source organism: Euglena gracilis
UQCRQ Chains: QH, Qh
Molecule details ›
Chains: QH, Qh
Length: 85 amino acids
Theoretical weight: 9.95 KDa
Source organism: Euglena gracilis
UQCR9 Chains: QI, Qi
Molecule details ›
Chains: QI, Qi
Length: 70 amino acids
Theoretical weight: 6.94 KDa
Source organism: Euglena gracilis
UQCR10 Chains: QJ, Qj
Molecule details ›
Chains: QJ, Qj
Length: 154 amino acids
Theoretical weight: 17.58 KDa
Source organism: Euglena gracilis
Ubiquinol-cytochrome-C reductase complex subunit IX, mitochondrial Chains: QK, Qk
Molecule details ›
Chains: QK, Qk
Length: 100 amino acids
Theoretical weight: 11.3 KDa
Source organism: Euglena gracilis
UniProt:
  • Canonical: P43266 (Residues: 1-100; Coverage: 100%)
NDUFS2 Chain: S2
Molecule details ›
Chain: S2
Length: 395 amino acids
Theoretical weight: 45.25 KDa
Source organism: Euglena gracilis
NDUFS3 Chain: S3
Molecule details ›
Chain: S3
Length: 277 amino acids
Theoretical weight: 32.47 KDa
Source organism: Euglena gracilis
NDUFS4 Chain: S4
Molecule details ›
Chain: S4
Length: 208 amino acids
Theoretical weight: 23.74 KDa
Source organism: Euglena gracilis
NDUFS5 Chain: S5
Molecule details ›
Chain: S5
Length: 122 amino acids
Theoretical weight: 14.24 KDa
Source organism: Euglena gracilis
NDUFS6 Chain: S6
Molecule details ›
Chain: S6
Length: 147 amino acids
Theoretical weight: 17.1 KDa
Source organism: Euglena gracilis
NDUFS7 Chain: S7
Molecule details ›
Chain: S7
Length: 207 amino acids
Theoretical weight: 22.84 KDa
Source organism: Euglena gracilis
NDUFS8 Chain: S8
Molecule details ›
Chain: S8
Length: 212 amino acids
Theoretical weight: 24.37 KDa
Source organism: Euglena gracilis
NDUFV1 Chain: V1
Molecule details ›
Chain: V1
Length: 526 amino acids
Theoretical weight: 57.94 KDa
Source organism: Euglena gracilis
NDUFV2 Chain: V2
Molecule details ›
Chain: V2
Length: 225 amino acids
Theoretical weight: 25.19 KDa
Source organism: Euglena gracilis
poly(UNK) Chains: A, B
Molecule details ›
Chains: A, B
Length: 12 amino acids
Theoretical weight: 1.04 KDa
Source organism: Euglena gracilis

Ligands and Environments

Experiments and Validation Details

Entry percentile scores
Resolution: 2.81Å
Relevant EMDB volumes: EMD-35720