› 8j1c

X-ray diffraction
2.2Å resolution

Structure of amino acid dehydrogenase in complex with NADP

Released:
DOI: 10.2210/pdb8j1c/pdb
PDB entry 8j1c coloured by chain, front view.
PDB entry 8j1c coloured by chain, side view.
PDB entry 8j1c coloured by chain, top view.
Source organism: Pseudomonas veronii
Primary publication:
First crystal structure of an NADP+-dependent l-arginine dehydrogenase belonging to the μ-crystallin family.
Kawakami R, Takami N, Hayashi J, Yoneda K, Ohmori T, Ohshima T, Sakuraba H
Int J Biol Macromol 249 126070 (2023)
PMID: 37524275

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-226620 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ornithine cyclodeaminase family protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 336 amino acids
Theoretical weight: 36.04 KDa
Source organism: Pseudomonas veronii
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A7Y0ZV07 (Residues: 1-315; Coverage: 100%)
Gene name: HBO43_18005
Sequence domains: Ornithine cyclodeaminase/mu-crystallin family

Ligands and Environments

4 bound ligands:
Ligand NAP 3 x NAP
Ligand LYS 1 x LYS
Ligand IMD 3 x IMD
Ligand EDO 1 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-5A
Spacegroup: P212121
Unit cell:
a: 90.965Å b: 92.617Å c: 162.475Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.215 0.213 0.26
Expression system: Escherichia coli

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