› 8jqf

X-ray diffraction
1.85Å resolution

Structure of CmCBDA in complex with Ni2+ and Glycerol

Released:
DOI: 10.2210/pdb8jqf/pdb
PDB entry 8jqf coloured by chain, front view.
PDB entry 8jqf coloured by chain, side view.
PDB entry 8jqf coloured by chain, top view.
Source organism: Cyclobacterium marinum
Primary publication:
Structural Insights into the Catalytic Activity of Cyclobacterium marinum N-Acetylglucosamine Deacetylase.
Hu S, Xu L, Xie C, Hong J
J Agric Food Chem (2023)
PMID: 38141024

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-237903 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
YdjC family protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 305 amino acids
Theoretical weight: 35.33 KDa
Source organism: Cyclobacterium marinum
Expression system: Escherichia coli
UniProt:
  • Canonical: G0J5L4 (Residues: 1-289; Coverage: 100%)
Gene name: Cycma_4778
Sequence domains: YdjC-like protein

Ligands and Environments

3 bound ligands:
Ligand GOL 2 x GOL
Ligand NI 2 x NI
Ligand SO4 2 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL18U1
Spacegroup: P21
Unit cell:
a: 67.228Å b: 60.017Å c: 86.635Å
α: 90° β: 110.92° γ: 90°
R-values:
R R work R free
0.163 0.161 0.196
Expression system: Escherichia coli

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