8jtl

X-ray diffraction
1.78Å resolution

Structure of OY phytoplasma SAP05 binding with AtRpn10

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-221246 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
26S proteasome non-ATPase regulatory subunit 4 homolog Chains: A, B
Molecule details ›
Chains: A, B
Length: 194 amino acids
Theoretical weight: 20.88 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: P55034 (Residues: 2-193; Coverage: 50%)
Gene names: At4g38630, F20M13.190, MBP1, MCB1, RPN10, T9A14.7
Sequence domains: von Willebrand factor type A domain
Sequence-variable mosaic (SVM) signal sequence domain-containing protein Chains: C, D
Molecule details ›
Chains: C, D
Length: 105 amino acids
Theoretical weight: 12.39 KDa
Source organism: Onion yellows phytoplasma OY-M
Expression system: Escherichia coli
UniProt:
  • Canonical: Q6YQ57 (Residues: 33-135; Coverage: 76%)
Gene name: PAM_518

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL10U2
Spacegroup: P21
Unit cell:
a: 52.41Å b: 39.37Å c: 121.94Å
α: 90° β: 93.79° γ: 90°
R-values:
R R work R free
0.186 0.184 0.218
Expression system: Escherichia coli