› 8jv0

X-ray diffraction
2.2Å resolution

Crystal structure of the SLA-2*1001 allele and ASFV antigenic peptide at 2.2A resolution

Released:
DOI: 10.2210/pdb8jv0/pdb
PDB entry 8jv0 coloured by chain, front view.
PDB entry 8jv0 coloured by chain, side view.
PDB entry 8jv0 coloured by chain, top view.
Source organisms:
Entry author: Wang S

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-502093 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Ig-like domain-containing protein Chains: A, D
Molecule details ›
Chains: A, D
Length: 275 amino acids
Theoretical weight: 31.76 KDa
Source organism: Sus scrofa
Expression system: Escherichia coli
UniProt:
  • Canonical: B1A9P1 (Residues: 25-299; Coverage: 81%)
Gene name: SLA-2
Sequence domains:
Beta-2-microglobulin Chains: B, E
Molecule details ›
Chains: B, E
Length: 98 amino acids
Theoretical weight: 11.43 KDa
Source organism: Sus scrofa
Expression system: Escherichia coli
UniProt:
  • Canonical: Q07717 (Residues: 21-118; Coverage: 100%)
Gene name: B2M
Sequence domains: Immunoglobulin C1-set domain
Protein MGF 110-11L Chains: C, F
Molecule details ›
Chains: C, F
Length: 9 amino acids
Theoretical weight: 1.09 KDa
Source organism: Asfivirus
Expression system: Not provided
UniProt:
  • Canonical: P0C9J3 (Residues: 262-270; Coverage: 3%)
Gene name: War-022

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: P212121
Unit cell:
a: 41.944Å b: 105.317Å c: 221.35Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.223 0.222 0.249
Expression systems:
  • Escherichia coli
  • Not provided

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