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28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Source organisms:
Biochemical function: structural constituent of ribosome
Biological process: translation
Cellular component: ribosome

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GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF13812
Domain description: Pentatricopeptide repeat domain
Occurring in:
  1. Small ribosomal subunit protein mS39
The deposited structure of PDB entry 8oip contains 2 copies of Pfam domain PF13812 (Pentatricopeptide repeat domain) in Small ribosomal subunit protein mS39. Showing 2 copies in chain GA [auth Ae].

PF00318
Domain description: Ribosomal protein S2
Occurring in:
  1. Mitochondrial ribosomal protein S2
The deposited structure of PDB entry 8oip contains 2 copies of Pfam domain PF00318 (Ribosomal protein S2) in Mitochondrial ribosomal protein S2. Showing 2 copies in chain DA [auth Ab].

PF01084
Domain description: Ribosomal protein S18
Occurring in:
  1. Small ribosomal subunit protein mS40
  2. Mitoribosomal protein bs18m, mrps18c
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF01084 (Ribosomal protein S18) in Small ribosomal subunit protein mS40. Showing 1 copy in chain Q [auth AO].
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF01084 (Ribosomal protein S18) in 28S ribosomal protein S18c, mitochondrial isoform 1. Showing 1 copy in chain R [auth AP].

PF09776
Domain description: Mitochondrial ribosomal protein L55
Occurring in:
  1. Mitochondrial ribosomal protein L55
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF09776 (Mitochondrial ribosomal protein L55) in Mitochondrial ribosomal protein L55. Showing 1 copy in chain B [auth Bd].

PF01245
Domain description: Ribosomal protein L19
Occurring in:
  1. Large ribosomal subunit protein bL19m
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF01245 (Ribosomal protein L19) in Large ribosomal subunit protein bL19m. Showing 1 copy in chain A [auth BX] (this domain is out of the observed residue ranges!).

PF16053
Domain description: Mitochondrial 28S ribosomal protein S34
Occurring in:
  1. Mitochondrial ribosomal protein S34
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF16053 (Mitochondrial 28S ribosomal protein S34) in Mitochondrial ribosomal protein S34. Showing 1 copy in chain JA [auth Aj].

PF00411
Domain description: Ribosomal protein S11
Occurring in:
  1. Mitochondrial ribosomal protein S11
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF00411 (Ribosomal protein S11) in Mitochondrial ribosomal protein S11. Showing 1 copy in chain IA [auth Ai].

PF00380
Domain description: Ribosomal protein S9/S16
Occurring in:
  1. 28S ribosomal protein S9, mitochondrial
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF00380 (Ribosomal protein S9/S16) in Mitochondrial ribosomal protein S9. Showing 1 copy in chain HA [auth Ag].

PF22330
Domain description: Small ribosomal subunit protein mS39, PPR
Occurring in:
  1. Small ribosomal subunit protein mS39

PF03719
Domain description: Ribosomal protein S5, C-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS5m
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF03719 (Ribosomal protein S5, C-terminal domain) in Small ribosomal subunit protein uS5m. Showing 1 copy in chain FA [auth Ad].

PF00333
Domain description: Ribosomal protein S5, N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS5m
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF00333 (Ribosomal protein S5, N-terminal domain) in Small ribosomal subunit protein uS5m. Showing 1 copy in chain FA [auth Ad].

PF21251
Domain description: Small ribosomal subunit protein uS5m, N-terminal
Occurring in:
  1. Small ribosomal subunit protein uS5m
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF21251 (40S ribosomal protein rpS2 (S5p), N-terminal) in Small ribosomal subunit protein uS5m. Showing 1 copy in chain FA [auth Ad].

PF06747
Domain description: CHCH domain
Occurring in:
  1. CHCH domain-containing protein
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF06747 (CHCH domain) in CHCH domain-containing protein. Showing 1 copy in chain EA [auth Ac].

PF00472
Domain description: RF-1 domain
Occurring in:
  1. Peptide chain release factor 1, mitochondrial
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF00472 (RF-1 domain) in Peptide chain release factor 1, mitochondrial. Showing 1 copy in chain CA [auth Aa].

PF03462
Domain description: PCRF domain
Occurring in:
  1. Peptide chain release factor 1, mitochondrial
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF03462 (PCRF domain) in Peptide chain release factor 1, mitochondrial. Showing 1 copy in chain CA [auth Aa].

PF08293
Domain description: Mitochondrial ribosomal subunit S27
Occurring in:
  1. Small ribosomal subunit protein mS33
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF08293 (Mitochondrial ribosomal subunit S27) in Small ribosomal subunit protein mS33. Showing 1 copy in chain BA [auth AZ].

PF15433
Domain description: Mitochondrial 28S ribosomal protein S31
Occurring in:
  1. Small ribosomal subunit protein mS31
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF15433 (Mitochondrial 28S ribosomal protein S31) in Small ribosomal subunit protein mS31. Showing 1 copy in chain AA [auth AY].

PF10236
Domain description: Mitochondrial ribosomal death-associated protein 3
Occurring in:
  1. Small ribosomal subunit protein mS29
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF10236 (Mitochondrial ribosomal death-associated protein 3) in Small ribosomal subunit protein mS29. Showing 1 copy in chain Z [auth AX].

PF10246
Domain description: Mitochondrial ribosomal protein MRP-S35
Occurring in:
  1. Mitoribosomal protein ms28, mrps28
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF10246 (Mitochondrial ribosomal protein MRP-S35) in Mitochondrial ribosomal protein S28. Showing 1 copy in chain Y [auth AW].

PF10037
Domain description: Mitochondrial 28S ribosomal protein S27
Occurring in:
  1. Mitochondrial ribosomal protein S27
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF10037 (Mitochondrial 28S ribosomal protein S27) in Mitochondrial ribosomal protein S27. Showing 1 copy in chain X [auth AV].

PF05047
Domain description: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Occurring in:
  1. Small ribosomal subunit protein mS25
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF05047 (Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ) in Small ribosomal subunit protein mS25. Showing 1 copy in chain V [auth AT].

PF10484
Domain description: Mitochondrial ribosomal protein S23
Occurring in:
  1. Small ribosomal subunit protein mS23 conserved domain-containing protein
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF10484 (Mitochondrial ribosomal protein S23) in Small ribosomal subunit protein mS23 conserved domain-containing protein. Showing 1 copy in chain U [auth AS].

PF10245
Domain description: Mitochondrial 28S ribosomal protein S22
Occurring in:
  1. Mitochondrial ribosomal protein S22
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF10245 (Mitochondrial 28S ribosomal protein S22) in Mitochondrial ribosomal protein S22. Showing 1 copy in chain T [auth AR].

PF01165
Domain description: Ribosomal protein S21
Occurring in:
  1. 28S ribosomal protein S21, mitochondrial
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF01165 (Ribosomal protein S21) in 28S ribosomal protein S21, mitochondrial. Showing 1 copy in chain S [auth AQ].

PF00366
Domain description: Ribosomal protein S17
Occurring in:
  1. 28S ribosomal protein S17, mitochondrial
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF00366 (Ribosomal protein S17) in 28S ribosomal protein S17, mitochondrial. Showing 1 copy in chain P [auth AN].

PF00886
Domain description: Ribosomal protein S16
Occurring in:
  1. Small ribosomal subunit protein bS16m
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF00886 (Ribosomal protein S16) in Small ribosomal subunit protein bS16m. Showing 1 copy in chain O [auth AM].

PF00312
Domain description: Ribosomal protein S15
Occurring in:
  1. Small ribosomal subunit protein uS15m
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF00312 (Ribosomal protein S15) in Small ribosomal subunit protein uS15m. Showing 1 copy in chain N [auth AL].

PF00253
Domain description: Ribosomal protein S14p/S29e
Occurring in:
  1. Mitochondrial ribosomal protein S14
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF00253 (Ribosomal protein S14p/S29e) in 28S ribosomal protein S14, mitochondrial. Showing 1 copy in chain M [auth AK].

PF00164
Domain description: Ribosomal protein S12/S23
Occurring in:
  1. Small ribosomal subunit protein uS12m
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF00164 (Ribosomal protein S12/S23) in Small ribosomal subunit protein uS12m. Showing 1 copy in chain L [auth AJ].

PF00338
Domain description: Ribosomal protein S10p/S20e
Occurring in:
  1. Small ribosomal subunit protein uS10m
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF00338 (Ribosomal protein S10p/S20e) in Small ribosomal subunit protein uS10m. Showing 1 copy in chain J [auth AH].

PF00177
Domain description: Ribosomal protein S7p/S5e
Occurring in:
  1. Small ribosomal subunit protein uS7m
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF00177 (Ribosomal protein S7p/S5e) in Small ribosomal subunit protein uS7m. Showing 1 copy in chain H [auth AF].

PF01250
Domain description: Ribosomal protein S6
Occurring in:
  1. Small ribosomal subunit protein bS6m
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF01250 (Ribosomal protein S6) in Small ribosomal subunit protein bS6m. Showing 1 copy in chain G [auth AE].

PF08213
Domain description: Mitochondrial mRNA-processing protein COX24, C-terminal
Occurring in:
  1. Small ribosomal subunit protein mS38
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF08213 (Mitochondrial mRNA-processing protein COX24, C-terminal) in Small ribosomal subunit protein mS38. Showing 1 copy in chain F [auth AD].

PF14955
Domain description: Mitochondrial ribosome subunit S24
Occurring in:
  1. Mitochondrial ribosomal protein S24
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF14955 (Mitochondrial ribosome subunit S24) in 28S ribosomal protein S24, mitochondrial. Showing 1 copy in chain E [auth AC].

PF10213
Domain description: Mitochondrial ribosomal subunit protein
Occurring in:
  1. Small ribosomal subunit protein mS35 mitochondrial conserved domain-containing protein
The deposited structure of PDB entry 8oip contains 1 copy of Pfam domain PF10213 (Mitochondrial ribosomal subunit protein ) in Small ribosomal subunit protein mS35 mitochondrial conserved domain-containing protein. Showing 1 copy in chain D [auth AB].

Rfam RNA family (Rfam)
RF00177
Domain description: Bacterial small subunit ribosomal RNA
Occurring in:
  1. 12S rRNA
The deposited structure of PDB entry 8oip contains 1 copy of Rfam domain RF00177 (Bacterial small subunit ribosomal RNA) in 12S rRNA. Showing 1 copy in chain C [auth AA].

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