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Cystargolide A (bound)

VSZ model coordinates provided in the wwPDB chemical component dictionary
Cystargolide A (bound) in PDB entry 8olr, assembly 1, side view.
Cystargolide A (bound) in PDB entry 8olr, assembly 1, top view.
Formula: C18 H32 N2 O6
Molecular weight: 372 Da
Ligand sub-components: 1 x V08, 1 x VAL

Environment details NEW

VSZ 301 bound to chain V
Ligands and residuesInteractions
 hydrophobic
negatively charged
aromatic
polar
cystein
water
positively charged
other
glycine
bound molecule
glycans (SNFG)
aromatic
clashes
covalent
electrostatic
metal hydrophobic
vdw
THR1ARG19TYR33LYS33ALA46GLY47ALA49TYR97SER129

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The above 2D and 3D (Mol*) views of ligand interactions use quaternary structure derived from the PDB entry.
Please note:
  • Some chain IDs in the tooltip are followed by a number in square brackets. This number corresponds to the operation ID (mmCIF ‘oper_expression’) used to transform the chain.
  • The structure seen in Mol* (3D view) was protonated using ChimeraX.
  • Interactions were calculated using Arpeggio (see details for interaction types).
  • The colour scheme used is consistent with Clustal X.

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