› 8opd

Electron Microscopy
3.5Å resolution

Virus-like Particle based on PVY coat protein with dC40 deletion with stacked-ring architecture

Released:
DOI: 10.2210/pdb8opd/pdb
PDB entry 8opd coloured by chain, front view.
PDB entry 8opd coloured by chain, side view.
PDB entry 8opd coloured by chain, top view.
Source organism: Potato virus Y strain NTN
Primary publication:
From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y.
Kavčič L, Kežar A, Koritnik N, Žnidarič MT, Klobučar T, Vičič Ž, Merzel F, Holden E, Benesch JLP, Podobnik M
OpenAccess logo Commun Chem 7 14 (2024)
PMID: 38233506
Related structures: EMD-17049

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
homo 24-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-239017 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Coat protein Chains: Aa, Ab, Ac, Ad, Ae, Af, Ag, Ah, Ai, Aj, Ak, Al, Am, An, Ao, Ap, Aq, Ar, As, At, Au, Av, Aw, Ax
Molecule details ›
Chains: Aa, Ab, Ac, Ad, Ae, Af, Ag, Ah, Ai, Aj, Ak, Al, Am, An, Ao, Ap, Aq, Ar, As, At, Au, Av, Aw, Ax
Length: 227 amino acids
Theoretical weight: 25.56 KDa
Source organism: Potato virus Y strain NTN
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A0A7DJG2 (Residues: 1-227; Coverage: 85%)
Sequence domains: Potyvirus coat protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.5Å
Relevant EMDB volumes: EMD-17049
Expression system: Escherichia coli BL21(DE3)

Quick links