› 8p4w

X-ray diffraction
1.78Å resolution

Lactobacillus plantarum LpdD mutant - H35A

Released:
DOI: 10.2210/pdb8p4w/pdb
PDB entry 8p4w coloured by chain, front view.
PDB entry 8p4w coloured by chain, side view.
PDB entry 8p4w coloured by chain, top view.
Source organism: Lactiplantibacillus plantarum
Entry authors: Gahloth D, Leys D

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-238901 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein LpdD Chain: A
Molecule details ›
Chain: A
Length: 136 amino acids
Theoretical weight: 15.05 KDa
Source organism: Lactiplantibacillus plantarum
Expression system: Escherichia coli-Pichia pastoris shuttle vector pPpARG4
UniProt:
  • Canonical: F9UT68 (Residues: 1-136; Coverage: 100%)
Gene names: lp_0272, lpdD
Sequence domains: Bacterial proteasome assembling chaperone-like protein

Ligands and Environments

1 bound ligand:
Ligand PO4 1 x PO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04
Spacegroup: P41212
Unit cell:
a: 58.97Å b: 58.97Å c: 83.38Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.195 0.194 0.22
Expression system: Escherichia coli-Pichia pastoris shuttle vector pPpARG4

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