› 8pe4

Electron Microscopy
3.21Å resolution

Capsid structure of the L-A helper virus from native viral communities

Released:
DOI: 10.2210/pdb8pe4/pdb
PDB entry 8pe4 coloured by chain, front view.
PDB entry 8pe4 coloured by chain, side view.
PDB entry 8pe4 coloured by chain, top view.
Source organism: Saccharomyces cerevisiae virus L-A
Primary publication:
Delineating organizational principles of the endogenous L-A virus by cryo-EM and computational analysis of native cell extracts.
Schmidt L, Tüting C, Kyrilis FL, Hamdi F, Semchonok DA, Hause G, Meister A, Ihling C, Stubbs MT, Sinz A, Kastritis PL
OpenAccess logo Commun Biol 7 557 (2024)
PMID: 38730276
Related structures: EMD-17628

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
homo 120-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-152335 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Major capsid protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 680 amino acids
Theoretical weight: 76.07 KDa
Source organism: Saccharomyces cerevisiae virus L-A
UniProt:
  • Canonical: P32503 (Residues: 1-680; Coverage: 100%)
Gene name: gag
Sequence domains: L-A virus, major coat protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.21Å
Relevant EMDB volumes: EMD-17628

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