› 8pfx

X-ray diffraction
1.03Å resolution

X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(D-p-FPhF)(CO3)3] in condition B

Released:
DOI: 10.2210/pdb8pfx/pdb
PDB entry 8pfx coloured by chain, front view.
PDB entry 8pfx coloured by chain, side view.
PDB entry 8pfx coloured by chain, top view.
Source organism: Gallus gallus
Primary publication:
Charge effect in protein metalation reactions by diruthenium complexes
Herrero Dominguez S, Teran A, Ferraro G, Sanchez-Pelaez AE, Merlino A
Inorg Chem Front (2023)

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132831 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysozyme C Chain: A
Molecule details ›
Chain: A
Length: 129 amino acids
Theoretical weight: 14.33 KDa
Source organism: Gallus gallus
UniProt:
  • Canonical: P00698 (Residues: 19-147; Coverage: 100%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family

Ligands and Environments

4 bound ligands:
Ligand NA 1 x NA
Ligand EPE 1 x EPE
Ligand FMT 2 x FMT
Ligand YJT 3 x YJT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ELETTRA BEAMLINE 11.2C
Spacegroup: P43212
Unit cell:
a: 76.72Å b: 76.72Å c: 38.39Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.193 0.192 0.214

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