› 8prd

X-ray diffraction
1.41Å resolution

The structure of nvBagel2

Released:
DOI: 10.2210/pdb8prd/pdb
PDB entry 8prd coloured by chain, front view.
PDB entry 8prd coloured by chain, side view.
PDB entry 8prd coloured by chain, top view.
Source organism: Dictyoglomus thermophilum H-6-12
Entry authors: Vandebroek L, Voet ARD, Lee XY

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-247282 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cell surface protein Chain: A
Molecule details ›
Chain: A
Length: 84 amino acids
Theoretical weight: 9.05 KDa
Source organism: Dictyoglomus thermophilum H-6-12
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'
UniProt:
  • Canonical: B5YBJ6 (Residues: 154-233; Coverage: 22%)
Gene name: DICTH_0179
Sequence domains: PQQ-like domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04
Spacegroup: I4
Unit cell:
a: 62.49Å b: 62.49Å c: 36.26Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.181 0.178 0.241
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'

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