› 8prm

X-ray diffraction
2.2Å resolution

The structure of nvBagel2 binding the P8W48O184 polyoxometalate

Released:
DOI: 10.2210/pdb8prm/pdb
PDB entry 8prm coloured by chain, front view.
PDB entry 8prm coloured by chain, side view.
PDB entry 8prm coloured by chain, top view.
Source organism: Dictyoglomus thermophilum H-6-12
Entry authors: Vandebroek L, Voet ARD, Lee XY

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-270008 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cell surface protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 84 amino acids
Theoretical weight: 9.05 KDa
Source organism: Dictyoglomus thermophilum H-6-12
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'
UniProt:
  • Canonical: B5YBJ6 (Residues: 154-233; Coverage: 22%)
Gene name: DICTH_0179
Sequence domains: PQQ-like domain

Ligands and Environments

1 bound ligand:
Ligand IR0 1 x IR0
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-1
Spacegroup: C2221
Unit cell:
a: 63.54Å b: 79.818Å c: 123.439Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.202 0.199 0.26
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'

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