› 8q6c

X-ray diffraction
1.38Å resolution

The RSL-D32N - sulfonato-calix[8]arene complex, P63 form, acetate pH 4.0

Released:
DOI: 10.2210/pdb8q6c/pdb
PDB entry 8q6c coloured by chain, front view.
PDB entry 8q6c coloured by chain, side view.
PDB entry 8q6c coloured by chain, top view.
Source organism: Ralstonia solanacearum
Primary publication:
Supramolecular Synthons in Protein-Ligand Frameworks.
Flood RJ, Mockler NM, Thureau A, Malinska M, Crowley PB
OpenAccess logo Cryst Growth Des 24 2149-2156 (2024)
PMID: 38463617

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-102700 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative fucose-binding lectin protein Chain: A
Molecule details ›
Chain: A
Length: 90 amino acids
Theoretical weight: 9.73 KDa
Source organism: Ralstonia solanacearum
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A0S4TLR1 (Residues: 2-91; Coverage: 99%)
Gene names: E7Z57_08365, HF909_06975, LBW55_09125, LBW59_25430, RUN39_v1_50103
Sequence domains: Fungal fucose-specific lectin

Ligands and Environments

3 bound ligands:
Ligand GOL 1 x GOL
Ligand BDF 1 x BDF
Ligand EVB 1 x EVB
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 2
Spacegroup: P63
Unit cell:
a: 59.824Å b: 59.824Å c: 64.678Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.195 0.194 0.196
Expression system: Escherichia coli BL21(DE3)

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