› 8qo1

Electron Microscopy
9.76Å resolution

Asymmetric structure of the Borrelia bacteriophage BB1 procapsid, 3D class 3

Released:
DOI: 10.2210/pdb8qo1/pdb
PDB entry 8qo1 coloured by chain, front view.
PDB entry 8qo1 coloured by chain, side view.
PDB entry 8qo1 coloured by chain, top view.
Source organism: Borreliella burgdorferi B31
Primary publication:
Structure of the Borrelia bacteriophage φBB1 procapsid.
Rūmnieks J, Füzik T, Tārs K
J Mol Biol 168323 (2023)
PMID: 37866476
Related structures: EMD-18519

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero 1668-mer (preferred)
PDBe Complex ID:
PDB-CPX-268656 (preferred)
Entry contents:
6 distinct polypeptide molecules
Macromolecules (6 distinct):
Cytosolic protein Chains: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, Aa, Ab, Ac, Ad, Ae, Af, Ag, Ah, Ai, Aj, Ak, Al, Am, An, Ao, Ap, Aq, Ar, As, At, Au, Av, Aw, Ax, Ay, Az, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ, BR, BS, BT, BU, BV, BW, BX, BY, BZ, Ba, Bb, Bc, Bd, Be, Ep, Eq, Er, Es, Et, Eu, Ev, Ew, Ex, Ey, Ez, FA, FB, FC, FD, FE, FF, FG, FH, FI, FJ, FK, FL, FM, FN, FO, FP, FQ, FR, FS, FT, FU, FV, FW, FX, FY, FZ, Fa, Fb, Fc, Fd, Fe, Ff, Fg, Fh, Fi, Fj, Fk, Fl, Fm, Fn, Fo, Fp, Fq, Fr, Fs, Ft, Fu, Fv, Fw, Fx, Fy, Fz, GA, GB, GC, GD, GE, GF, GG, GH, GI, GJ, GK, GL, GM, GN, GO, GP, GQ, GR, GS, GT, Je, Jf, Jg, Jh, Ji, Jj, Jk, Jl, Jm, Jn, Jo, Jp, Jq, Jr, Js, Jt, Ju, Jv, Jw, Jx, Jy, Jz, KA, KB, KC, KD, KE, KF, KG, KH, KI, KJ, KK, KL, KM, KN, KO, KP, KQ, KR, KS, KT, KU, KV, KW, KX, KY, KZ, Ka, Kb, Kc, Kd, Ke, Kf, Kg, Kh, Ki, Kj, Kk, Kl, Km, Kn, Ko, Kp, Kq, Kr, Ks, Kt, Ku, Kv, Kw, Kx, Ky, Kz, LA, LB, LC, LD, LE, LF, LG, LH, LI, OT, OU, OV, OW, OX, OY, OZ, Oa, Ob, Oc, Od, Oe, Of, Og, Oh, Oi, Oj, Ok, Ol, Om, On, Oo, Op, Oq, Or, Os, Ot, Ou, Ov, Ow, Ox, Oy, Oz, PA, PB, PC, PD, PE, PF, PG, PH, PI, PJ, PK, PL, PM, PN, PO, PP, PQ, PR, PS, PT, PU, PV, PW, PX, PY, PZ, Pa, Pb, Pc, Pd, Pe, Pf, Pg, Ph, Pi, Pj, Pk, Pl, Pm, Pn, Po, Pp, Pq, Pr, Ps, Pt, Pu, Pv, Pw, Px, TI, TJ, TK, TL, TM, TN, TO, TP, TQ, TR, TS, TT, TU, TV, TW, TX, TY, TZ, Ta, Tb, Tc, Td, Te, Tf, Tg, Th, Ti, Tj, Tk, Tl, Tm, Tn, To, Tp, Tq, Tr, Ts, Tt, Tu, Tv, Tw, Tx, Ty, Tz, UA, UB, UC, UD, UE, UF, UG, UH, UI, UJ, UK, UL, UM, UN, UO, UP, UQ, UR, US, UT, UU, UV, UW, UX, UY, UZ, Ua, Ub, Uc, Ud, Ue, Uf, Ug, Uh, Ui, Uj, Uk, Ul, Um
Molecule details ›
Chains: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, Aa, Ab, Ac, Ad, Ae, Af, Ag, Ah, Ai, Aj, Ak, Al, Am, An, Ao, Ap, Aq, Ar, As, At, Au, Av, Aw, Ax, Ay, Az, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ, BR, BS, BT, BU, BV, BW, BX, BY, BZ, Ba, Bb, Bc, Bd, Be, Ep, Eq, Er, Es, Et, Eu, Ev, Ew, Ex, Ey, Ez, FA, FB, FC, FD, FE, FF, FG, FH, FI, FJ, FK, FL, FM, FN, FO, FP, FQ, FR, FS, FT, FU, FV, FW, FX, FY, FZ, Fa, Fb, Fc, Fd, Fe, Ff, Fg, Fh, Fi, Fj, Fk, Fl, Fm, Fn, Fo, Fp, Fq, Fr, Fs, Ft, Fu, Fv, Fw, Fx, Fy, Fz, GA, GB, GC, GD, GE, GF, GG, GH, GI, GJ, GK, GL, GM, GN, GO, GP, GQ, GR, GS, GT, Je, Jf, Jg, Jh, Ji, Jj, Jk, Jl, Jm, Jn, Jo, Jp, Jq, Jr, Js, Jt, Ju, Jv, Jw, Jx, Jy, Jz, KA, KB, KC, KD, KE, KF, KG, KH, KI, KJ, KK, KL, KM, KN, KO, KP, KQ, KR, KS, KT, KU, KV, KW, KX, KY, KZ, Ka, Kb, Kc, Kd, Ke, Kf, Kg, Kh, Ki, Kj, Kk, Kl, Km, Kn, Ko, Kp, Kq, Kr, Ks, Kt, Ku, Kv, Kw, Kx, Ky, Kz, LA, LB, LC, LD, LE, LF, LG, LH, LI, OT, OU, OV, OW, OX, OY, OZ, Oa, Ob, Oc, Od, Oe, Of, Og, Oh, Oi, Oj, Ok, Ol, Om, On, Oo, Op, Oq, Or, Os, Ot, Ou, Ov, Ow, Ox, Oy, Oz, PA, PB, PC, PD, PE, PF, PG, PH, PI, PJ, PK, PL, PM, PN, PO, PP, PQ, PR, PS, PT, PU, PV, PW, PX, PY, PZ, Pa, Pb, Pc, Pd, Pe, Pf, Pg, Ph, Pi, Pj, Pk, Pl, Pm, Pn, Po, Pp, Pq, Pr, Ps, Pt, Pu, Pv, Pw, Px, TI, TJ, TK, TL, TM, TN, TO, TP, TQ, TR, TS, TT, TU, TV, TW, TX, TY, TZ, Ta, Tb, Tc, Td, Te, Tf, Tg, Th, Ti, Tj, Tk, Tl, Tm, Tn, To, Tp, Tq, Tr, Ts, Tt, Tu, Tv, Tw, Tx, Ty, Tz, UA, UB, UC, UD, UE, UF, UG, UH, UI, UJ, UK, UL, UM, UN, UO, UP, UQ, UR, US, UT, UU, UV, UW, UX, UY, UZ, Ua, Ub, Uc, Ud, Ue, Uf, Ug, Uh, Ui, Uj, Uk, Ul, Um
Length: 319 amino acids
Theoretical weight: 36.26 KDa
Source organism: Borreliella burgdorferi B31
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q9R3U6 (Residues: 1-319; Coverage: 100%)
Gene names: BB_L06, BB_O06, BB_P06, BB_S06
Decoration protein P03 Chains: Bf, Bg, Bh, Bi, Bj, Bk, Bl, Bm, Bn, Bo, Bp, Bq, Br, Bs, Bt, Bu, Bv, Bw, Bx, By, Bz, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CU, CV, CW, CX, CY, CZ, Ca, Cb, Cc, Cd, Ce, Cf, Cg, Ch, Ci, GU, GV, GW, GX, GY, GZ, Ga, Gb, Gc, Gd, Ge, Gf, Gg, Gh, Gi, Gj, Gk, Gl, Gm, Gn, Go, Gp, Gq, Gr, Gs, Gt, Gu, Gv, Gw, Gx, Gy, Gz, HA, HB, HC, HD, HE, HF, HG, HH, HI, HJ, HK, HL, HM, HN, HO, HP, HQ, HR, HS, HT, HU, HV, HW, HX, LJ, LK, LL, LM, LN, LO, LP, LQ, LR, LS, LT, LU, LV, LW, LX, LY, LZ, La, Lb, Lc, Ld, Le, Lf, Lg, Lh, Li, Lj, Lk, Ll, Lm, Ln, Lo, Lp, Lq, Lr, Ls, Lt, Lu, Lv, Lw, Lx, Ly, Lz, MA, MB, MC, MD, ME, MF, MG, MH, MI, MJ, MK, ML, MM, Py, Pz, QA, QB, QC, QD, QE, QF, QG, QH, QI, QJ, QK, QL, QM, QN, QO, QP, QQ, QR, QS, QT, QU, QV, QW, QX, QY, QZ, Qa, Qb, Qc, Qd, Qe, Qf, Qg, Qh, Qi, Qj, Qk, Ql, Qm, Qn, Qo, Qp, Qq, Qr, Qs, Qt, Qu, Qv, Qw, Qx, Qy, Qz, RA, RB, Un, Uo, Up, Uq, Ur, Us, Ut, Uu, Uv, Uw, Ux, Uy, Uz, VA, VB, VC, VD, VE, VF, VG, VH, VI, VJ, VK, VL, VM, VN, VO, VP, VQ, VR, VS, VT, VU, VV, VW, VX, VY, VZ, Va, Vb, Vc, Vd, Ve, Vf, Vg, Vh, Vi, Vj, Vk, Vl, Vm, Vn, Vo, Vp, Vq
Molecule details ›
Chains: Bf, Bg, Bh, Bi, Bj, Bk, Bl, Bm, Bn, Bo, Bp, Bq, Br, Bs, Bt, Bu, Bv, Bw, Bx, By, Bz, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CU, CV, CW, CX, CY, CZ, Ca, Cb, Cc, Cd, Ce, Cf, Cg, Ch, Ci, GU, GV, GW, GX, GY, GZ, Ga, Gb, Gc, Gd, Ge, Gf, Gg, Gh, Gi, Gj, Gk, Gl, Gm, Gn, Go, Gp, Gq, Gr, Gs, Gt, Gu, Gv, Gw, Gx, Gy, Gz, HA, HB, HC, HD, HE, HF, HG, HH, HI, HJ, HK, HL, HM, HN, HO, HP, HQ, HR, HS, HT, HU, HV, HW, HX, LJ, LK, LL, LM, LN, LO, LP, LQ, LR, LS, LT, LU, LV, LW, LX, LY, LZ, La, Lb, Lc, Ld, Le, Lf, Lg, Lh, Li, Lj, Lk, Ll, Lm, Ln, Lo, Lp, Lq, Lr, Ls, Lt, Lu, Lv, Lw, Lx, Ly, Lz, MA, MB, MC, MD, ME, MF, MG, MH, MI, MJ, MK, ML, MM, Py, Pz, QA, QB, QC, QD, QE, QF, QG, QH, QI, QJ, QK, QL, QM, QN, QO, QP, QQ, QR, QS, QT, QU, QV, QW, QX, QY, QZ, Qa, Qb, Qc, Qd, Qe, Qf, Qg, Qh, Qi, Qj, Qk, Ql, Qm, Qn, Qo, Qp, Qq, Qr, Qs, Qt, Qu, Qv, Qw, Qx, Qy, Qz, RA, RB, Un, Uo, Up, Uq, Ur, Us, Ut, Uu, Uv, Uw, Ux, Uy, Uz, VA, VB, VC, VD, VE, VF, VG, VH, VI, VJ, VK, VL, VM, VN, VO, VP, VQ, VR, VS, VT, VU, VV, VW, VX, VY, VZ, Va, Vb, Vc, Vd, Ve, Vf, Vg, Vh, Vi, Vj, Vk, Vl, Vm, Vn, Vo, Vp, Vq
Length: 185 amino acids
Theoretical weight: 20.03 KDa
Source organism: Borreliella burgdorferi B31
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q9R2Q0 (Residues: 1-185; Coverage: 100%)
Gene names: BB_L03, BB_P03
Sequence domains: Lyme disease proteins of unknown function
Decoration protein P04 Chains: Cj, HY, MN, RC, Vr
DUF228 domain-containing protein Chains: Ck, Cl, Cm, Cn, Co, Cp, Cq, Cr, Cs, Ct, Cu, Cv, Cw, Cx, Cy, Cz, DA, DB, DC, DD, DE, DF, DG, DH, DI, DJ, HZ, Ha, Hb, Hc, Hd, He, Hf, Hg, Hh, Hi, Hj, Hk, Hl, Hm, Hn, Ho, Hp, Hq, Hr, Hs, Ht, Hu, Hv, Hw, Hx, Hy, MO, MP, MQ, MR, MS, MT, MU, MV, MW, MX, MY, MZ, Ma, Mb, Mc, Md, Me, Mf, Mg, Mh, Mi, Mj, Mk, Ml, Mm, Mn, RD, RE, RF, RG, RH, RI, RJ, RK, RL, RM, RN, RO, RP, RQ, RR, RS, RT, RU, RV, RW, RX, RY, RZ, Ra, Rb, Rc, Vs, Vt, Vu, Vv, Vw, Vx, Vy, Vz, WA, WB, WC, WD, WE, WF, WG, WH, WI, WJ, WK, WL, WM, WN, WO, WP, WQ, WR
Scaffold protein Chains: DK, DL, DM, DN, DO, DP, DQ, DR, DS, DT, DU, DV, DW, DX, DY, DZ, Da, Db, Dc, Dd, De, Df, Dg, Dh, Di, Dj, Dk, Dl, Dm, Dn, Do, Dp, Dq, Dr, Ds, Dt, Du, Dv, Dw, Dx, Dy, Dz, EA, EB, EC, ED, EE, EF, EG, EH, EI, EJ, EK, EL, EM, EN, EO, EP, EQ, ER, ES, ET, EU, EV, EW, EX, EY, EZ, Ea, Eb, Ec, Ed, Ee, Ef, Eg, Eh, Ei, Ej, Ek, El, Em, En, Eo, Hz, IA, IB, IC, ID, IE, IF, IG, IH, II, IJ, IK, IL, IM, IN, IO, IP, IQ, IR, IS, IT, IU, IV, IW, IX, IY, IZ, Ia, Ib, Ic, Id, Ie, If, Ig, Ih, Ii, Ij, Ik, Il, Im, In, Io, Ip, Iq, Ir, Is, It, Iu, Iv, Iw, Ix, Iy, Iz, JA, JB, JC, JD, JE, JF, JG, JH, JI, JJ, JK, JL, JM, JN, JO, JP, JQ, JR, JS, JT, JU, JV, JW, JX, JY, JZ, Ja, Jb, Jc, Jd, Mo, Mp, Mq, Mr, Ms, Mt, Mu, Mv, Mw, Mx, My, Mz, NA, NB, NC, ND, NE, NF, NG, NH, NI, NJ, NK, NL, NM, NN, NO, NP, NQ, NR, NS, NT, NU, NV, NW, NX, NY, NZ, Na, Nb, Nc, Nd, Ne, Nf, Ng, Nh, Ni, Nj, Nk, Nl, Nm, Nn, No, Np, Nq, Nr, Ns, Nt, Nu, Nv, Nw, Nx, Ny, Nz, OA, OB, OC, OD, OE, OF, OG, OH, OI, OJ, OK, OL, OM, ON, OO, OP, OQ, OR, OS, Rd, Re, Rf, Rg, Rh, Ri, Rj, Rk, Rl, Rm, Rn, Ro, Rp, Rq, Rr, Rs, Rt, Ru, Rv, Rw, Rx, Ry, Rz, SA, SB, SC, SD, SE, SF, SG, SH, SI, SJ, SK, SL, SM, SN, SO, SP, SQ, SR, SS, ST, SU, SV, SW, SX, SY, SZ, Sa, Sb, Sc, Sd, Se, Sf, Sg, Sh, Si, Sj, Sk, Sl, Sm, Sn, So, Sp, Sq, Sr, Ss, St, Su, Sv, Sw, Sx, Sy, Sz, TA, TB, TC, TD, TE, TF, TG, TH, WS, WT, WU, WV, WW, WX, WY, WZ, Wa, Wb, Wc, Wd, We, Wf, Wg, Wh, Wi, Wj, Wk, Wl, Wm, Wn, Wo, Wp, Wq, Wr, Ws, Wt, Wu, Wv, Ww, Wx, Wy, Wz, XA, XB, XC, XD, XE, XF, XG, XH, XI, XJ, XK, XL, XM, XN, XO, XP, XQ, XR, XS, XT, XU, XV, XW, XX, XY, XZ, Xa, Xb, Xc, Xd, Xe, Xf, Xg, Xh, Xi, Xj, Xk, Xl, Xm, Xn, Xo, Xp, Xq, Xr, Xs, Xt, Xu, Xv, Xw, YJ, YK, YL, YM, YN, YO, YP, YQ, YR, YS, YT, YU, YV, YW, YX, YY, YZ, Ya, Yb, Yc, Yd, Ye, Yf, Yg, Yh, Yi, Yj, Yk, Yl, Ym, Yn, Yo, Yp, Yq, Yr, Ys, Yt, Yu, Yv, Yw, Yx, Yy, Yz, ZA, ZB, ZC, ZD, ZE, ZF, ZG, ZH, ZI, ZJ, ZK, ZL, ZM, ZN, ZO, ZP, ZQ, ZR, ZS, ZT, ZU, ZV, ZW, ZX, ZY, ZZ, Za, Zb, Zc, Zd, Ze, Zf, Zg, Zh, Zi, Zj, Zk, Zl, Zm, Zn, Zo, Zp, Zq, Zr, Zs, Zt, Zu, Zv, Zw, Zx, Zy, Zz, aA, aB, aC, aD, aE, aF, aG, aH, aI, aJ, aK, aL, aM, aN, aO, aP, aQ, aR, aS, aT, aU, aV, aW, aX, aY, aZ, aa, ab, ac, ad, ae, af, ag, ah, ai, aj, ak, al, am, an, ao, ap, aq, ar, as, at, au, av, aw, ax, ay, az, bA, bB, bC, bD, bE, bF, bG, bH, bI, bJ, bK, bL, bM, bN, bO, bP, bQ, bR, bS, bT, bU, bV, bW, bX, bY, bZ, ba, bb, bc, bd, be, bf, bg, bh, bi, bj, bk, bl, bm, bn, bo, bp, bq, br, bs, bt, bu, bv, bw, bx, by, bz, cA, cB, cC, cD, cE, cF, cG, cH, cI, cJ, cK, cL, cM, cN, cO, cP, cQ, cR, cS, cT, cU, cV, cW, cX, cY, cZ, ca, cb, cc, cd, ce, cf, cg, ch, ci, cj, ck, cl, cm, cn, co, cp, cq, cr, cs, ct, cu, cv, cw, cx, cy, cz, dA, dB, dC, dD, dE, dF, dG, dH, dI, dJ, dK, dL, dM, dN, dO, dP, dQ, dR, dS, dT, dU, dV, dW, dX, dY, dZ, da, db, dc, dd, de, df, dg, dh, di, dj, dk, dl, dm, dn, do, dp, dq, dr, ds, dt, du, dv, dw, dx, dy, dz, eA, eB, eC, eD, eE, eF, eG, eH, eI, eJ, eK, eL, eM, eN, eO, eP, eQ, eR, eS, eT, eU, eV, eW, eX, eY, eZ, ea, eb, ec, ed, ee, ef, eg, eh, ei, ej, ek, el, em, en, eo, ep, eq, er, es, et, eu, ev, ew, ex, ey, ez, fA, fB, fC, fD, fE, fF, fG, fH, fI, fJ, fK, fL, fM, fN, fO, fP, fQ, fR, fS, fT, fU, fV, fW, fX, fY, fZ, fa, fb, fc, fd, fe, ff, fg, fh, fi, fj, fk, fl, fm, fn, fo, fp, fq, fr, fs, ft, fu, fv, fw, fx, fy, fz, gA, gB, gC, gD
Anti-CBASS protein Acb1-like N-terminal domain-containing protein Chains: Xx, Xy, Xz, YA, YB, YC, YD, YE, YF, YG, YH, YI

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this EM entry.
Resolution: 9.76Å
Relevant EMDB volumes: EMD-18519
Expression system: Escherichia coli BL21

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