› 8qvh

X-ray diffraction
2.24Å resolution

Comparison of room-temperature and cryogenic structures of soluble Epoxide Hydrolase with ligands bound.

Released:
DOI: 10.2210/pdb8qvh/pdb
PDB entry 8qvh coloured by chain, front view.
PDB entry 8qvh coloured by chain, side view.
PDB entry 8qvh coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Exploring serial crystallography for drug discovery.
Dunge A, Phan C, Uwangue O, Bjelcic M, Gunnarsson J, Wehlander G, Käck H, Brändén G
IUCrJ (2024)
PMID: 39072424

Function and Biology Details

Reactions catalysed: 
(9S,10S)-10-hydroxy-9-(phosphonooxy)octadecanoate + H(2)O = (9S,10S)-9,10-dihydroxyoctadecanoate + phosphate
An epoxide + H(2)O = a glycol
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-543163 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Bifunctional epoxide hydrolase 2 Chain: A
Molecule details ›
Chain: A
Length: 549 amino acids
Theoretical weight: 62 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P34913 (Residues: 1-548; Coverage: 99%)
Gene name: EPHX2
Sequence domains:

Ligands and Environments

1 bound ligand:
Ligand AUB 1 x AUB
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: MAX IV BEAMLINE BioMAX
Spacegroup: P6522
Unit cell:
a: 95.41Å b: 95.41Å c: 244.29Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.189 0.187 0.228
Expression system: Spodoptera frugiperda

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Citations

1 review citation

A snapshot love story: what serial crystallography has done and will do for us.
Henkel et al. (2024)