8t0s

X-ray diffraction
1.95Å resolution

Crystal structure of UBE2G2 adduct with phenethyl isothiocyanate (PEITC) at the Cys48 position

Released:
Source organism: Homo sapiens
Entry authors: Wang C, Shaw GX, Shi G, Ji X

Function and Biology Details

Reactions catalysed:
S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine + [E2 ubiquitin-conjugating enzyme]-L-cysteine = [E1 ubiquitin-activating enzyme]-L-cysteine + S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine
[E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine + [acceptor protein]-L-cysteine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-S-ubiquitinyl-L-cysteine

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-158052 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Ubiquitin-conjugating enzyme E2 G2 Chain: A
Molecule details ›
Chain: A
Length: 165 amino acids
Theoretical weight: 18.71 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P60604 (Residues: 1-165; Coverage: 100%)
Gene names: UBC7, UBE2G2
Sequence domains: Ubiquitin-conjugating enzyme
E3 ubiquitin-protein ligase AMFR Chain: B
Molecule details ›
Chain: B
Length: 27 amino acids
Theoretical weight: 3.37 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q9UKV5 (Residues: 574-600; Coverage: 4%)
Gene names: AMFR, RNF45
Sequence domains: E3 gp78 Ube2g2-binding region (G2BR)

Ligands and Environments

1 bound ligand:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-ID
Spacegroup: P212121
Unit cell:
a: 47.894Å b: 59.345Å c: 67.901Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.176 0.174 0.208
Expression systems:
  • Escherichia coli
  • Not provided