› 8t2i

Electron Microscopy
10.4Å resolution

Negative stain EM assembly of MYC, JAZ, and NINJA complex

Released:
DOI: 10.2210/pdb8t2i/pdb
PDB entry 8t2i coloured by chain, front view.
PDB entry 8t2i coloured by chain, side view.
PDB entry 8t2i coloured by chain, top view.
Source organisms:
Primary publication:
Assembly of JAZ-JAZ and JAZ-NINJA complexes in jasmonate signaling.
Zhou XE, Zhang Y, Yao J, Zheng J, Zhou Y, He Q, Moreno J, Lam VQ, Cao X, Sugimoto K, Vanegas-Cano L, Kariapper L, Suino-Powell K, Zhu Y, Novick S, Griffin PR, Zhang F, Howe GA, Melcher K
OpenAccess logo Plant Commun 100639 (2023)
PMID: 37322867
Related structures: EMD-40983

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-272653 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (4 distinct):
Transcription factor MYC3 Chain: A
Molecule details ›
Chain: A
Length: 190 amino acids
Theoretical weight: 20.97 KDa
Source organism: Arabidopsis thaliana
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q9FIP9 (Residues: 49-238; Coverage: 32%)
Gene names: ATR2, At5g46760, BHLH5, EN36, MYC3, MZA15.18
Sequence domains: bHLH-MYC and R2R3-MYB transcription factors N-terminal
Maltose/maltodextrin-binding periplasmic protein Chain: M
Molecule details ›
Chain: M
Length: 404 amino acids
Theoretical weight: 44.78 KDa
Source organism: Escherichia coli
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P0AEX9 (Residues: 27-392; Coverage: 99%)
Gene names: JW3994, b4034, malE
Sequence domains: Bacterial extracellular solute-binding protein
Protein TIFY 10A Chain: J
AFP homolog 2 Chain: N

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 10.4Å
Relevant EMDB volumes: EMD-40983
Expression system: Spodoptera frugiperda

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