› 8tyh

X-ray diffraction
1.83Å resolution

Plasmodium vivax PMX

Released:
DOI: 10.2210/pdb8tyh/pdb
PDB entry 8tyh coloured by chain, front view.
PDB entry 8tyh coloured by chain, side view.
PDB entry 8tyh coloured by chain, top view.
Source organism: Plasmodium vivax Sal-1
Entry authors: Hodder AN, Scally SW, Cowman AF

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-500657 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptidase A1 domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 538 amino acids
Theoretical weight: 59.59 KDa
Source organism: Plasmodium vivax Sal-1
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: A5KAC3 (Residues: 27-545; Coverage: 100%)
Gene name: PVX_088125
Sequence domains: Eukaryotic aspartyl protease

Ligands and Environments

3 bound ligands:
Ligand GOL 1 x GOL
Ligand TEW 1 x TEW
Ligand NAG 1 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Spacegroup: P63
Unit cell:
a: 136.299Å b: 136.299Å c: 45.946Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.229 0.228 0.251
Expression system: Spodoptera frugiperda

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